YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42546010, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSGYDAVV DVDDEGDLGH TDLQEDLEFH TSNFNDTNPN TRKPPSGGSG LPAPATASSG  60
   61 SGSSKRFLWS MNFYAQFFDV DTSAVLSRCW AALFPRANFL DVLEGNPDLY GPFWIATTVV 120
  121 LILFLGGTIS QYMSDTGKGP FLYDFKLLSG AAGLIYGYTL FIPMGLFLAL RYFGSESANL 180
  181 LECWALYGYS NLIWIPVALI SSSPISILNW VFVGVGFGIS VAFLLRNLYP VLSATDRQVS 240
  241 KVLLVVVVLL HAGLSLAIKI LFFAHGSPVS STPDKSKGD

Type	Start	End	Confidence
Cytoplasmic	1	109	0.84
Transmembrane Helix	110	133	0.86
Non-Cytoplasmic	134	149	0.70
Transmembrane Helix	150	173	0.84
Cytoplasmic	174	182	0.60
Transmembrane Helix	183	200	0.79
Non-Cytoplasmic	201	206	0.62
Transmembrane Helix	207	229	0.87
Cytoplasmic	230	241	0.85
Transmembrane Helix	242	263	0.94
Non-Cytoplasmic	264	279	0.91