YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4_GIBZE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	30	0.84
Non-Cytoplasmic	31	464	0.95
Transmembrane Helix	465	488	0.85
Cytoplasmic	489	496	0.90
Transmembrane Helix	497	516	0.95
Non-Cytoplasmic	517	522	0.77
Transmembrane Helix	523	540	0.82
Cytoplasmic	541	552	0.77
Transmembrane Helix	553	576	0.85
Non-Cytoplasmic	577	582	0.65
Transmembrane Helix	583	602	0.86
Cytoplasmic	603	611	0.69
Transmembrane Helix	612	633	0.90
Non-Cytoplasmic	634	640	0.74
Transmembrane Helix	641	659	0.96
Cytoplasmic	660	679	0.80
Transmembrane Helix	680	702	0.86
Non-Cytoplasmic	703	715	0.82
Transmembrane Helix	716	735	0.90
Cytoplasmic	736	740	0.84
Transmembrane Helix	741	761	0.84
Non-Cytoplasmic	762	765	0.53
Transmembrane Helix	766	784	0.63
Cytoplasmic	785	819	0.66
Transmembrane Helix	820	841	0.89
Non-Cytoplasmic	842	861	0.63
Transmembrane Helix	862	883	0.88
Cytoplasmic	884	889	0.62
Transmembrane Helix	890	912	0.90
Non-Cytoplasmic	913	925	0.66
Transmembrane Helix	926	951	0.82
Cytoplasmic	952	981	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSSRIGFM AIAVAFHLVY ILSIFDIYFV SPIVTGMKLF GVERPHESPK APADRLVLFV  60
   61 GDGLRADKAF QAHPEPYPES DQDLVPRHLA PYLRSRVLEH GTFGVSHTRV PTESRPGHVA 120
  121 LIAGLYEDVS AVATGWKMNP VNFDSVFNRS RHTWSWGSPD ILPMFQHGAV PGRVDAFAYG 180
  181 AELEDFSKDA TELDYWVFDH VKDFFAAAAT NETLNTALRE DKVVFFLHLL GLDTTGHSYR 240
  241 PYSKEYLHNI KVVDQGVKEI VELIERFYGD DRTAFVFTAD HGMSDWGSHG DGHPNNTRTP 300
  301 LISWGSGVAA PELHPGSIAP GHDELSSDWN LDHVRRHDVA QADVAALMSY LIGTEFPANG 360
  361 VGQLPLNFLS ASIKEKAEAS LANAQVILEQ YRVKEENKRN VELRYQPYGQ LSDGNLDPES 420
  421 RISHIRSLIE AGSFEEAIEE SDALMSIGLQ GLRYLQTYDW LFLRALITIG YLGWMAYATT 480
  481 TVLSLYVVKE SMSPQRTLLG SAFFLSLLVA LYSSFIISKS PPAYYLYAFF PVLFWEEVYA 540
  541 RRANVAKGFQ ALFGHVKSGG AVVALVFNVV LYLGVIQSLA LAYIHREILT GLFVLGAFWP 600
  601 MTQGISFLRS HLFLSMLWFF SCLAMSTFTL LPAMKVEDIP LIMAGGGLMT FVGLAYLVLE 660
  661 DFILSDVSSS KTKLKRLHTS RTLLGIQVGL IILAMLVTHS SATSLQAKLG LPKGNQIVGW 720
  721 FVLVTSLLMP LAYRLQPNSH YMHRLAIIFL TCAPTFVILT ISYEGLFYVA FSITLLSWVR 780
  781 LEYAVDAFTQ EKAKKQATVA GSQQHTPSTF RPLSLSDARI ALFFMVLLQS AFFSTGNIAS 840
  841 ISSFSLESVS RLIPVFDPFS QGALLILKII IPFFLISANL GVLNKRLGVA PSAIFMVVLT 900
  901 ASDVLTLYFF WVVKDEGSWL EIGSTITHFA IASFLCVFVA ALEFVSAAFI AGIEVEDTKS 960
  961 AALTSASTKA DEKVPPVAGA E