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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46106841, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTQADVDDF GLPIRRYPTP KNDEPADAPT DAPTDASKGE TPASSSLDGA ATDEQSKAPE  60
   61 AKDDKDKTKD QATPPAGEAV KADDQSDTFE DARSEQSSPR KETRLETSAV AQETPTPIET 120
  121 TPTKNESLDT ESTPSESKPG VPEEVLPKAT DVPEKPVEEN KVLAVESARP TDHKPEVSEE 180
  181 VQPAVNDAPK PKDIEVGVDK KESPSDVTVP VPTSPIQPKR EQISEFSHQK ITEQPEEKKG 240
  241 EAELEWQEMP AYARYDMYND DDKLVAKEYD AEEVETYEYG GLGGAGKGYT RVFLDDDAES 300
  301 ATSMDENTKY LFKSAAGTSM VDDDDGRDAI GQMQATKDLL TEGQRVAYVG LVRLEIVRLV 360
  361 KEEEKMKTFK KTKKEVGIAV ESMMMWGQKM MLRLYAHMEI NEAEQIMIEQ LAEHGVMPQD 420
  421 LSPALVTNAR VANPMAEGEA SMPGTPSLDE KPAEVPPPYQ ALDGEELSDV KTPSQLPTTS 480
  481 KIDIDLRWTV LCDLFLLLIA DSIYDARSRV LLERVGESLD ITWIDICRFE KKVTEALEMQ 540
  541 QAAEKENWNE EEHTEARRKK ALTRRYVMMG LATVGGGLVI GLSAGLLAPV IGAGLATGLT 600
  601 AVGVTGTGSF LGGVGGAAII TSGAAASGSL IGGRAAGRRT GAVKTFEYRP LHNNKRVNLI 660
  661 VTISGWLTGK VDDVRLPFST VDPVMGDIYS VLFEPEMLRS MGDTINILAT EALTSSIQQI 720
  721 LGTTILATLM SAIQLPIILT KLSYLIDNPW AVSLDRATAA GKILADSLIE RNLGTRPITL 780
  781 VGFSIGARVV FSCLQELAKK GGVGIVQNVY MFGSPIVVSR EEYIKAKTVV SGRFLNAYNR 840
  841 NDWILGYLFR LTSGGIRRVA GLAPVEECPF VENMDVTDLV NGHMDYRQKM PVLLMRCGWS 900
  901 VDSEEFVEIE DPDPDNHNER QRELINEIEE ARKNLEKDGK AKKSGRFSFF GRRKNAGKQD 960
  961 WEIYEDQKKN GDYKDKAKEG GDSNTGVLFD IDAIRAEIAK DARDHYASHE DLQVKEIKST1020
 1021 LPPMKLDVSS LPGSPSATAN GSQTNINTAR DSHDIRGSQE RSHSYTPSYT RQATPPAYGS1080
 1081 PYGAGFGSEH GNAYGSDRHD EDDIQMTFDT SFDDHPRSTA TTAPATETTP TRPPIKTAQT1140
 1141 LPSMTLHEPW GDSDDDDFGK EKEISMTFA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle