YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46110054, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDDPKAALG QGLKSDNIST DSEIILTPEP ASPDNAPVDS TLLDTPVLGA TTPRGSMHSR  60
   61 HPSFSGSSSN HEDWDGPPLD RLSVLDLLEN FALPQQLEKL QKGITAQTDK VRRSREAIKT 120
  121 KTQSARHRMV EEWRRRVPEA DEQLDRYRKQ MQHRVDKLGK RWGDTKVISA REKVSFIFGV 180
  181 MNIFLSGYLI GAHPEQFHWW YTVQLLYFMP IRFFTYRQRG YHYFVADLCY FTNLLLALSI 240
  241 WVFPGSKRLF TASYCLAFGN NAVAIIMWRN SLVFHSFDKV TSLFIHIMPC ATLHCIVHLF 300
  301 SPEKQKEQFP AIWTIKNSPP GSPTAYANVV SMLAWSTLPY IFWQLMYYFF ITVRRRDKIA 360
  361 AGRPTSFTWL KKSYANTWLG KFVLRQPERL QEATFMLIQY SYALLTMLPC PLWFLSRWAS 420
  421 ATFLMVVFTW SIYNGATYYI DVFGVRFQKE LEAMKAEVAQ WQNSPEHLPQ SPTLEARPDE 480
  481 SSANQLTQQG VAPSASTGQI PSMNEVNREK NMMGGTSLSK DDANRPISVD NIPLLNDMQS 540
  541 SSSTGVDGRP VNNTRGRRVD

Type	Start	End	Confidence
Cytoplasmic	1	173	0.98
Transmembrane Helix	174	192	0.93
Non-Cytoplasmic	193	196	0.87
Transmembrane Helix	197	216	0.78
Cytoplasmic	217	222	0.77
Transmembrane Helix	223	243	0.93
Non-Cytoplasmic	244	249	0.72
Transmembrane Helix	250	272	0.86
Cytoplasmic	273	281	0.71
Transmembrane Helix	282	301	0.88
Non-Cytoplasmic	302	328	0.84
Transmembrane Helix	329	351	0.83
Cytoplasmic	352	394	0.88
Transmembrane Helix	395	415	0.82
Non-Cytoplasmic	416	420	0.65
Transmembrane Helix	421	442	0.78
Cytoplasmic	443	560	0.81