YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545742, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATGTSVSL LKFVGTVSLG LLTGVSYSIS SLALPALLRL PSSASASHGL STLSAALKTP  60
   61 VLALTSLASA PFLISFFLAP RSSRHPYLLY TAILATLSSV APILIPTPTP APRRTASSAP 120
  121 RKSSRAKMEA SYEVLGDAHS EPASDEDIED INGEEVRAEV EGLTRSYLAR TAISALGFAM 180
  181 AVVGIWGDGA PQSVVYVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.67
Transmembrane Helix	16	38	0.85
Cytoplasmic	39	55	0.68
Transmembrane Helix	56	79	0.85
Non-Cytoplasmic	80	86	0.70
Transmembrane Helix	87	107	0.87
Cytoplasmic	108	166	0.84
Transmembrane Helix	167	187	0.86
Non-Cytoplasmic	188	198	0.79