YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545731, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRFNSGYG LGGPAPYGGS QAAEPQQGEG FLEQIRPYTS KIEDALDTIS EPVKPYLPAI  60
   61 GRFLIVVTFF EDALRIVTQW SDQLLYLKDY RHIPSGITHL FLLVNIIAMF SCSTLVIIRK 120
  121 HSDYAVAGLM GVVVTQALGY GLIFDLNFFL RNLSVIGGLV MVLSDSWVRK TQVFAGLPQI 180
  181 DEKDRKMYFQ LAGRVLLIFL FIGFVFSGEW SLWRVIVSSL GGISCVMVVV GFKAKYSATL 240
  241 LVVILSIFNL LVNNFWTLHE HHPHKDFAKY DFFQILSIVG GLLLLVNSGP GQFSIDEKKK 300
  301 VY

Type	Start	End	Confidence
Cytoplasmic	1	58	0.79
Transmembrane Helix	59	77	0.54
Non-Cytoplasmic	78	95	0.69
Transmembrane Helix	96	118	0.89
Cytoplasmic	119	123	0.70
Transmembrane Helix	124	144	0.84
Non-Cytoplasmic	145	147	0.78
Transmembrane Helix	148	168	0.79
Cytoplasmic	169	186	0.93
Transmembrane Helix	187	206	0.91
Non-Cytoplasmic	207	211	0.72
Transmembrane Helix	212	232	0.86
Cytoplasmic	233	237	0.78
Transmembrane Helix	238	258	0.91
Non-Cytoplasmic	259	271	0.79
Transmembrane Helix	272	291	0.89
Cytoplasmic	292	302	0.77