YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46107292, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.93
Cytoplasmic	61	67	0.89
Transmembrane Helix	68	88	0.93
Non-Cytoplasmic	89	123	0.90
Transmembrane Helix	124	148	0.80
Cytoplasmic	149	154	0.86
Transmembrane Helix	155	178	0.86
Non-Cytoplasmic	179	192	0.88
Transmembrane Helix	193	213	0.94
Cytoplasmic	214	226	0.86
Transmembrane Helix	227	246	0.90
Non-Cytoplasmic	247	258	0.72
Transmembrane Helix	259	279	0.94
Cytoplasmic	280	287	0.87
Transmembrane Helix	288	307	0.93
Non-Cytoplasmic	308	312	0.76
Transmembrane Helix	313	335	0.87
Cytoplasmic	336	343	0.95
Transmembrane Helix	344	368	0.83
Non-Cytoplasmic	369	387	0.93
Transmembrane Helix	388	411	0.90
Cytoplasmic	412	513	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYVVPGPPT PFNGTNEELG GDSTTENLNQ WYQSGDQAFI LVSACLVLLM VPGIAFLYSG  60
   61 LARRKSALSM LWVVMMSFSV IVFQWYFWGF SLAFSTTSNN PFIGDLKHFG LRHVWGAPSV 120
  121 GSALIPALLY SFYQMMFCAV TAALTIGAVA ERGRVIPSMV FIFFWATLVY CPLAYWVWNP 180
  181 SGWGFVNGVL DYAGGVPVEI GSGMSALAYS WVLGRRNEKM MMNFRPHNIS LITLGTIFLW 240
  241 FGWLGFNGGS AFGANLRAVM ACWNSCLTAM FAAMTWCILD FRLARKWSMV GWCSGTISGL 300
  301 VAATPASGFI DPWASIILGV VAGVACNFAT KVKFLIRIDD SLDVFAEHGV GGIVGLIFNA 360
  361 FFARGSIIGL DGVNTGATGG FMDGNYVIIG WQIAAIVGAS SYAFVMSAII AKIIDLIPGL 420
  421 KLRASEEAEL LGMDDDQHGE FSYDYVEVRR DFLAWSPQRG EPAEDGDVLE PTHGIHEHQS 480
  481 MMNPSESDDA RKTPSLNTPD VIAPDAVINE KHA