YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42545630, gi|...
Protein type: Transmembrane
Type Confidence: 0.52
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPSSPLSIP DGENSTLSSP LSILSKTPSA PSSPTMLDPT KLDPSRRYPS PSTTASGPHS  60
   61 PAKMSDLPSE DEVVVKASDA STQGPPAKKR RITPPKERTT EYLDLTKGDE EQTKEDTHLL 120
  121 NRLRDTLRKK KKIVVIAGAG ISVAAGIPDF RSSTGLFASV KNQHNLKGSG KHLFDASVYK 180
  181 HDDTTESFHA MVREMAAKTK SAKPTPFHHL LASLAHEGRL LRLYSQNIDC IDTSMEPLAT 240
  241 QVPLNPKGPW PTTIQLHGGL QNMVCTKCSS LQEFDGEIFT GPKPPLCPTC QDLDEVRTAH 300
  301 AGKRSHGIGR LRPRFVLYNE YNPDEEAIGN VSSADLKARP DAVVVVGTTL KVPGTRRLVR 360
  361 EMCQVTRGRK NGVAIWINLD DEPKGVDLKN CWDIVVRSKC DNVAHLADLT HWDFNIGEGY 420
  421 ELTKEEEQER ENRLAKGKTT VEVNIPASSP SLDPDADEKA AVKPKQVEQA QGIPTPNASP 480
  481 KISAAKKPGK KQSTLSFNGQ QQPPNTATSA PKPRKRGRKP AQPKPDTPAV EFKAKKFTNQ 540
  541 DKGKKPEPTI PAKRKATVSD FTHKSTAQTQ NSNADNTSTS PSSPFTTTKK DTISPKSRPS 600
  601 GMDFLID

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle