YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545575, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.52
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	104	0.98
Transmembrane Helix	105	127	0.85
Cytoplasmic	128	142	0.96
Transmembrane Helix	143	164	0.90
Non-Cytoplasmic	165	174	0.85
Transmembrane Helix	175	194	0.93
Cytoplasmic	195	205	0.90
Transmembrane Helix	206	225	0.94
Non-Cytoplasmic	226	233	0.78
Transmembrane Helix	234	254	0.92
Cytoplasmic	255	263	0.90
Transmembrane Helix	264	285	0.90
Non-Cytoplasmic	286	296	0.86
Transmembrane Helix	297	316	0.93
Cytoplasmic	317	331	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQRGRPWA RIISLTVLVL TFAITVDAST GDRLPEFKDC LKVCNAENCA PNKPQTPIPV  60
   61 LHRLLLWNCA SECDYACQHI VTGQRMATGL SVEQFYGKWP FYRFLGMQEP FSVLFSLGNL 120
  121 WAHWYGLKTM DQARIPKSYS MRIFYDWLAY IGIASWTFSS IFHTRDFHVT EELDYFAAGA 180
  181 SVLYGLYYTV VRVFRLDKRT PRRRTTLRLW SLLCASLFLS HVSYLKFVRW DYTYNMAANV 240
  241 AAGIVQHVLW SWFSFNRYRE SRRIWAAWPG FVVAWIIFAM SMELFDFPPW LGCIDAHSLW 300
  301 HLMTIGPTIL WYNFLVKDAQ DDMARSQRLK L