YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545553, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPQLAASTL HSYFLKRPRS CVRYTSRGPP PNVTRSAIQP GRVNSSKRLN RLEDRTPGIT  60
   61 VPLPGNSLSG PGLNLLPTTT SPLSHHYPMA SPPKPWEQPG AAATAAVPSI SPSAASTIDS 120
  121 PDAPPVPNRP ASLTSTVNQN AANYSRMNSS PYGSMGGAYS SPYSSPYSRF GMGGMGGMSG 180
  181 GYGSMYGGGY GGYGGGMYGG MGGGMYGGGM GMPGDQNSLT NSFNNSTQAT FQMLEGIVTA 240
  241 FGGFAQMLES TYMATHSSFF AMVSVAEQFG NLRDTLGSVL GIFTLMRWIR TLIAKITGRP 300
  301 PPVDATALTP AAFARFEGRS IGPDGNPLPA KASRKPLIFF VLAAFGIPYL MSKMIRSLAA 360
  361 SQEQEQKRLQ AQAIESQQPV DPSKLEFCRL TFDFLPQPNT GMELEARKGD LVAVLNKNDP 420
  421 SGNPSEWWQC RARDGRQGYL PSTYLEVIKR PAQEPKKLKA APSDNSRASS LTSSIIRPED 480
  481 GKEYASADGM QRSHFYS

Type	Start	End	Confidence
Cytoplasmic	1	169	0.92
Transmembrane Helix	170	188	0.64
Non-Cytoplasmic	189	189	0.39
Transmembrane Helix	190	214	0.61
Cytoplasmic	215	228	0.49
Transmembrane Helix	229	248	0.67
Non-Cytoplasmic	249	268	0.55
Transmembrane Helix	269	289	0.63
Cytoplasmic	290	336	0.84
Transmembrane Helix	337	355	0.87
Non-Cytoplasmic	356	497	0.83