YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG8_GIBZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	131	0.64
Transmembrane Helix	132	151	0.91
Non-Cytoplasmic	152	179	0.86
Transmembrane Helix	180	202	0.81
Cytoplasmic	203	220	0.81
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	259	0.87
Transmembrane Helix	260	280	0.73
Cytoplasmic	281	317	0.77
Transmembrane Helix	318	336	0.76
Non-Cytoplasmic	337	342	0.73
Transmembrane Helix	343	363	0.67
Cytoplasmic	364	383	0.67
Transmembrane Helix	384	404	0.93
Non-Cytoplasmic	405	411	0.77
Transmembrane Helix	412	432	0.91
Cytoplasmic	433	443	0.94
Transmembrane Helix	444	467	0.90
Non-Cytoplasmic	468	475	0.85
Transmembrane Helix	476	498	0.89
Cytoplasmic	499	501	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEHYPTLAQ TALVAAAFKI LLFPAYKSTD FEVHRNWLAI TNSLPLEKWY VEKTSEWTLD  60
   61 YPPFFAYFEW ILAHVARLVD PLMVKVYNLD YDSWQTVYFQ RTSVIVTELV LVWALQTFIE 120
  121 TAPLKSRRAA QTVALSIILS PGLLIIDHIH FQYNGFMYGI LVMSLVLARQ NSELLSSGLI 180
  181 FAALLCFKHI YLYLAPAYFV YLLRAYCLSS KSIFRIRFLN SIKLGLGIGA IFGAAFGPFA 240
  241 AMDQIPQLLS RLFPFSRGLC HAYWAPNVWA LYSFADRILI HVAPRLGWAV NKSALQSVTR 300
  301 GLVGDTAFAV LPEISPRTCF VLTLFFQVVP LIKLFFQPTW ETFIGAVTLC GYSSFLFGWH 360
  361 VHEKAILLVI IPFSLIALRD RRHLGAFRPL VVAGYVSLFP LLFTPAEFPI KTIYTIVWLV 420
  421 VFLLAFGRLA PASNKPRIFL LDRFSTLYIA ISIPLILYCS LLHHLIFGKA YEFIPLMFTS 480
  481 SYTAIGVVGS WVGYMVVYFT A