YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46111255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	353	0.95
Transmembrane Helix	354	375	0.93
Cytoplasmic	376	382	0.81
Transmembrane Helix	383	402	0.92
Non-Cytoplasmic	403	407	0.90
Transmembrane Helix	408	426	0.87
Cytoplasmic	427	434	0.80
Transmembrane Helix	435	452	0.80
Non-Cytoplasmic	453	469	0.87
Transmembrane Helix	470	492	0.81
Cytoplasmic	493	499	0.76
Transmembrane Helix	500	517	0.59
Non-Cytoplasmic	518	546	0.57
Transmembrane Helix	547	569	0.84
Cytoplasmic	570	617	0.49
Transmembrane Helix	618	639	0.79
Non-Cytoplasmic	640	658	0.65
Transmembrane Helix	659	683	0.80
Cytoplasmic	684	701	0.64
Transmembrane Helix	702	724	0.88
Non-Cytoplasmic	725	741	0.68
Transmembrane Helix	742	764	0.88
Cytoplasmic	765	767	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFTANARSP TVTMPRIKSM TTGSIPSFVD LILNFDEGDT SSTLASQDTW LAQIKAHGMG  60
   61 KLLMYGDDTW LKLFPNTFDR EDGTTSFFVA DFTEVDHNVT RNIAPELENN DWGLMVLHYL 120
  121 GLDHIGHKAG PKSPNMIPKQ EEMDSIVETL FEAMKTKPHL DSTLLVLCGD HGMNDAGNHG 180
  181 ASSPGETSPA LVFMSPKLKS ISSKLPAPAQ PKDEFDFYSM VEQSDLAPTI AALLGFPVSK 240
  241 NNLGAFIPDF LPFWDKTSDQ IQILVRNARQ ILNIVTAAFG SELFDSKSSV DPCALEQTEI 300
  301 NELACQWRKI NKEAHVLAAG DNLDQKWLDE MSQWLRRAQD LMSSMASNYD MPKLYIGQAI 360
  361 AAIAAVASAM VVVSLGAHRD RQILPFALLT LAYGAMMYAS SYVEEEQHFW YWASSIWLVI 420
  421 QGVLHVRRKN STEEAAWVFV ALAALRITRG WNQTGQKFAG DPDIVKSFVV THPQLLWGII 480
  481 TLGYMMLSFR LLARLKSLPS LASTSITSVL LMSAYSFKLD FTSEDAPELV VGFAKSLNDL 540
  541 LVGQSLLWRA RTAFILLSLL FGYGIYRSFT GGRNWQMQSA YLFHHLYTIF GMTQSRATNI 600
  601 PLFHLSDILF HALQATDLSV TGITITAILL QYTTFFAFGG SNAISSVDLS SAYNGISGFN 660
  661 FFAVGFLTLV SNWAGPIFWT SAANLLLLRK YHEGQRNAFW QYIALQTLFV SATVALVMAA 720
  721 CTSLRTHLFI WTVFSPKYLY CMAWSLGQHL LINVGFGGLL FWLGSRN