YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545332, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVMAQHET QGQVLQHAKQ GLEGSMKPVN PEIDADEMQE QEQEEGRMRP SLNFTGHQLF  60
   61 YVFGLDGMGA MLLSGGVNFA LAYPMYTTQD TTKNPIRLFQ LPNTLSGDAA VTIIIQCILT 120
  121 WFVEMGLVSY DLSKRSVQPV GFIPEPSHPW MRWLFFLPPS DPSDSETESE KVRPVESKVD 180
  181 SLFNTIVQGA LRGFMFAVAG FILLWPLSVG ILTTLGERDG GDWRYDDHWI PQAFKAILGG 240
  241 ILSLLTTPLM ALFWLVKAGW EGNDERSNAR ESRRSQYADA QRQYEPAV

Type	Start	End	Confidence
Cytoplasmic	1	58	0.93
Transmembrane Helix	59	81	0.88
Non-Cytoplasmic	82	108	0.85
Transmembrane Helix	109	128	0.88
Cytoplasmic	129	192	0.92
Transmembrane Helix	193	215	0.89
Non-Cytoplasmic	216	235	0.86
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	288	0.94