YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46109306, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.81
Transmembrane Helix	59	76	0.76
Non-Cytoplasmic	77	142	0.62
Transmembrane Helix	143	165	0.85
Cytoplasmic	166	193	0.43
Transmembrane Helix	194	216	0.73
Non-Cytoplasmic	217	226	0.57
Transmembrane Helix	227	260	0.79
Cytoplasmic	261	280	0.54
Transmembrane Helix	281	306	0.82
Non-Cytoplasmic	307	600	0.60
Transmembrane Helix	601	622	0.94
Cytoplasmic	623	640	0.80
Transmembrane Helix	641	660	0.89
Non-Cytoplasmic	661	667	0.70
Transmembrane Helix	668	688	0.90
Cytoplasmic	689	697	0.81
Transmembrane Helix	698	720	0.86
Non-Cytoplasmic	721	741	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAADKAAVA SGADLGDGLR QRPIAGQANL QPPTPQPEDN KKLIKKEPSF LDTLDRWEVV  60
   61 IAPLIFTLLA LFTRLYKIGI SNIVTWDEAH FGKFGSYYIK HEYYFDVHPP LGKMLVGLSG 120
  121 VLAGYNGTFE FKSGEKYPEE VNYTIMRIFN AAFGILCIPL AYFTARELRL KRPAVWLVTL 180
  181 MVLCENSYTT ISRFILLDSM LLCGTVATVF CWSKFHNQRN NSFDPEWFFW LFMTGLSIGC 240
  241 VCSVKLVGLF VTALVGLYTI EDLWRKFGDT KMPVTTLGAH VVTRVVGLIV IPFLIYLLSF 300
  301 ALHFAILDRS GPGDAQMSSL FQANLKGTQV GKDSPLEIAI GSRATIKNMG YGGGLLHSHV 360
  361 QTYPEGSKQQ QVTCYHHKDT NNDWFFYPNR REEDYSPEGD LRFIGDNSVI RLIHAQTGRN 420
  421 LHSHDIAAPI TRGHKEVSSY GNLTVGDEKD HWKVEVIRDT ASRDRSKIRT LTTAFRLKHE 480
  481 VLGCYLRAGN VNLPQWGFKQ IEVTCTKENN PRDTYTHWNV EAHWNDKLPP AEAGVYKSPF 540
  541 FHDFVHLNVA MMTSNNALVP DPDKQDDLAS KWWQWPFLHV GLRMCGWGDD IVKYFLLGNP 600
  601 LIYWGSTASL GIAGLVIVWY ILRWQRGVND LSEKEIDHIH YAALYPLAGW FLHYLPFVIM 660
  661 ARVTYVHHYY PALYFAILNF GFLIDWFTRN RNNTIKSIVY GVLYTVIIGL YIYFIPICWG 720
  721 MTGPHKEYKY MKWFDNWRVT D