YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|46137303, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.84
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSCIMKPLA VIASVAALAS PVSGEKILYS NSLNSCQKDN GFKATLFNVA LTPNNGSAYV  60
   61 KAVATSSIQG KVKFDIRLSA YGYQFLQQTV DPCSINLAGL CPMVSGKIPF KFNLPVGKEN 120
  121 LAQVPGIAYN IPDLDATVRV YVNMSDTGES VACVEASFSN GKTVDLKGVK WATAIIAGLG 180
  181 LISSAIVSGV GHANTAAHVA SNSLSLFGYF QAQAILGLTS VGLPPIVASW TQDFQWSMGI 240
  241 IRVGFMQDIF TWYQRATGGT PESILYNVRQ VSVQVQKRSL DLASTSIDLF KRSAAMMPRG 300
  301 ITEPIGNAAG ALSKRANIQT ADGTYIVYGI QRVAFKSRIE STNLFMTGLT FFCIFVVITC 360
  361 LAIAAFKGIT ELCARQRWMA QDKFLEFRNG WLTVLKGILF RLTLIGFPQM AILCLWEFTQ 420
  421 QDSPAEVVLA VFFLLGMAFT LGWGASKVIR IARRSVAMHR NPAYILFSDP QALNKWGFLY 480
  481 VQFRASAYYF IVPVLIYTLV KAMFVGLAQK SDITQAVGFI IIEVGFLIAS SVLRPWMDKP 540
  541 TNSFNIAIAA INFINAIFLL IFSNVFGLPK IVVGVVGVVL FVLNASFALI LLLMLIVSTA 600
  601 LVFFRKNPDA RYQFMADDRA SFMKSQTQVN ATTELDALAA TARGDKSGYN KHLDLDEEDS 660
  661 VSSESLARRA EPNNQSQASF QRGDAPPRSP VNPAMPLFPA DGRPSSPFRT ASPNPYQQSN 720
  721 SNLSQQRSAD NNSPGGYRSQ NNASPWQRGA GYEH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle