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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42545182, gi|...
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.27
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGIPSSVI GRCLGTSSNY SPAIFASTPI RTVTELSARW PTTPILFSNV RLNHTQRQTQ  60
   61 IWKQTVSNGV PGTPVFPLCH AIKPQKSMRE RTTPLTAQSL ISQPSALLSR SAITWQQHRF 120
  121 YSGRGSSSGN GPKCSCGKDI SDIPPTPART TEDLKKVKPS TLSETSKDAT NQTTKSGDQV 180
  181 PAGTNSEPVS YMSYLHLPRM PHRPTKDELL EAANGFWQRL KVRLKWISIR SMRPWNIDEW 240
  241 GAFVSWFLFG HLAWIIVGTT TFFSLIILSI NTVVAQETLA QWVGDYLTQS AGVTVVFESA 300
  301 IVPKWRDNVI SFRNVFVSRR PGQGNVSSVS KGSSDAAAEA AAGRKAEAPE VEDDGNYTQF 360
  361 DITLSTVNVT LSFLNWWNGK GLLKDVEIKG VRGVLDRTSV TWPVEEVDPL SYRHKHQPGD 420
  421 FEIEKFKMED LLLTVHQPGG FRPFSVSIFS CELPQLRKQW LFYDFLSANH MSGSFDGSLF 480
  481 TIHPRQVHGV VPSGNGDPEA SVGFGDPKAW KKFSRLRIDG LRIDHLNRGV EGPFGWIYEG 540
  541 NVDIVADVMF PADTDESITK VMADFYDQLE DIVDTNRHRF IRNIQEQGPA LLTSGHLSNF 600
  601 TSDLLGDKPA EEEPQTSEEE RRYLIMDLRI SMNDVKAAVP LFTKDMSYVN QALVRPIVAY 660
  661 INAKKTYIPI NCRIVKRASD FDGSWSIFDC GLMNDMSAET YDAFANDVEN QQSRVRRFKK 720
  721 VGFWTLSVAV HALFMGMAGN VV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle