YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42545146, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPERNTGGEG AAGARRRRSS SILQVYHEPP ETLEQISDQA SLPNLNANWT NAKGAWTIHL  60
   61 VLILSAKIIF DAIPGVSQET SWTLTNMSYM FGSYIMFHHV RGVPFDFNSG AFDNLNMWEQ 120
  121 IDNGAQYTPT KKFLLSVPIA LFLVSTHYTH YDLTYFTINL LAVLGVVIPK LPFLITDFPQ 180
  181 SHRMRFGLFS GIPEE

Type	Start	End	Confidence
Cytoplasmic	1	54	0.75
Transmembrane Helix	55	74	0.52
Non-Cytoplasmic	75	81	0.36
Transmembrane Helix	82	100	0.41
Cytoplasmic	101	132	0.50
Transmembrane Helix	133	149	0.56
Non-Cytoplasmic	150	154	0.67
Transmembrane Helix	155	176	0.83
Cytoplasmic	177	195	0.81