YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42545035, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAPTGRRS PVIVGDAMSG GDFNNFSSDG DLAEFLDFNS NSPDTLQTME TLGGSDPKGF  60
   61 LAPQDLTSTA TFPDSPNGSS YQDSSSESAS SKRTTSRTSS KAAMNTTDMM VDEDDVKMEW 120
  121 GNPSFSTYED DSAYAFGSSD ADTALESMYT FTDHNDTFLD HPYAFDTASS SPNGENSVTS 180
  181 PPMPTINPHG FTRDATPKRK KPQGHQKASS QYSVSSAMNA LKTTTSRENS PMSNNMIMSQ 240
  241 DPSPVAMFNS PSPHNPVDFS SRAANGAGLG WPSRNGVAGQ SAPDALPLHF SGQINQPMPM 300
  301 PQQLNMPTPY NVTGQYSLTI LPTPFKSRVE TQIPIKMVLS PMPPGVTKLH LPPHTISKPK 360
  361 LLAKPSPKKS PDMLELFVSL VCTSAMDEPG RTENALKRAA SHPQRYLPPD NDDKNAPSKG 420
  421 GDVRICAGCI TRERKRAARK KVKKPEEEEV WQQDEQHRVI VFNTQEIKEW QPANGPMAVP 480
  481 GTLQVDAPMR IACYCRHHGE KAGFNVIFTI KDFEDRVIAQ AMSKPIMITD DHKTHPQAQT 540
  541 AAQQQPGVPE APVPVPVPGP APQAAVETSA LLPPTPNGAF SMSPTNGDVP NMPRNSQPPY 600
  601 QSSMSNVTPT GACGRMLSRP GSPTLGGPIA KKRKSSASRV PNGLTMTRMD TTPSPGSQAA 660
  661 QLPNTTSPFT PGLGGFPQAE SYVGQQSLMY ASAGPPTPSS NEAFFNGNRS ASMDNMMMVP 720
  721 PLYSAPASNN ASRAPSPGSL MNGVANQFSQ DTSSNMFSVP IGGNETRLPP VIHKIIPNQG 780
  781 PKIGGVEVTV LGAAFSQGLE VWFGNQKATT TTFWGESSLV CLLPPSPVVG LVPVHFKHAN 840
  841 PQAAQAFAMT KQTPFFKYVD DNEEKLIRLA LSVLGNKMSG NMMDIQDLAR RILDDSPSAW 900
  901 SGGPSGGPSS GGQMFSHAPY AHLESQLLKC LDLIDLDDST HRTRLDLKRS TGHTMLHHAC 960
  961 SLGYHRFVAA LLARGASPNA QDKGGFSPLH IAAIHNHAEI VRRLMLHGAD PTLRSDSGLA1020
 1021 AADVAQSRAV LRTIRRSERH IRSRSSGGSL HSRASSATSL RSLWEPMTKV HTHDEPISPD1080
 1081 SSEESPEYTS GDFEDEDPDE NDYLSMRRPS GFRQDRERPN LRRRMTGELE EELVPPVTAM1140
 1141 AATPAALKEQ LQQQIHQFQQ SIAMQFQNLP HFPQMPAFPN MPDYQAPFMR RVQQFMPGMA1200
 1201 GPRPEGEQPQ RWWDSAPKAS ASAPPAYEEI YPREELDRKQ ASAARAAVEA EADQKCAALF1260
 1261 DLPTATEVET ESVEVTEVTE ITQAKAEEPE VLKIGRKNAI TKEQQEQFRR AHEVKMKRIS1320
 1321 SDHNLFFIWI PLLLVMICAM LYSYFPWLFT FAWAFVRSLY NHGLSKTQQL IQHNLPDQIE1380
 1381 RVIEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle