YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GWT1_GIBZE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.85
Transmembrane Helix	24	43	0.87
Cytoplasmic	44	52	0.82
Transmembrane Helix	53	73	0.91
Non-Cytoplasmic	74	80	0.71
Transmembrane Helix	81	99	0.94
Cytoplasmic	100	131	0.97
Transmembrane Helix	132	155	0.84
Non-Cytoplasmic	156	168	0.85
Transmembrane Helix	169	190	0.88
Cytoplasmic	191	213	0.89
Transmembrane Helix	214	232	0.84
Non-Cytoplasmic	233	244	0.80
Transmembrane Helix	245	264	0.92
Cytoplasmic	265	269	0.80
Transmembrane Helix	270	289	0.85
Non-Cytoplasmic	290	313	0.84
Transmembrane Helix	314	336	0.86
Cytoplasmic	337	353	0.91
Transmembrane Helix	354	377	0.83
Non-Cytoplasmic	378	395	0.83
Transmembrane Helix	396	419	0.84
Cytoplasmic	420	441	0.93
Transmembrane Helix	442	464	0.85
Non-Cytoplasmic	465	471	0.79
Transmembrane Helix	472	495	0.87
Cytoplasmic	496	501	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDTASYKQQ KEDFVSNLSG GSVAEINYVT SVAAVAILLW SVLQARQSFF EPYTALAFAV  60
   61 DFLLNVGAIL LSVTLYSNSP LLLNLLLIAP AILVFTLPPR SRSPKKKAKI PPNARSNESS 120
  121 GQLDILSTKP FLTNFRGCML IVTCVAILAV DFRLFPRRFA KVETWGTSLM DLGVGSFVFS 180
  181 AGLVAARPVL REKATGRAGA VGNALSLSSR LVQSLRHSIP LLVLGFIRFL SVKGLDYAEH 240
  241 VTEYGVHWNF FFTLGFLPPF VAIFQSVRKL IPSFAALSLL VGVTYQVLLE TTSLKAYVLT 300
  301 APRTDLISMN REGIFSFVGY LAIFLAGQDT GMFVIPRNLV PKSTASPGAQ RNKLLKITAV 360
  361 WGGVWTGLYV LSTNYHYGFG LAVSRRMANL PYVLWVVAFN TIQLLGFAVI DTIFFPAFYN 420
  421 AQDAKTEKEA YTHATSRVMR AYNRNGLAVF LLANLLTGLV NMTVNTLDAT PIATMGILVV 480
  481 YSAALTGVAV ALDAYNISIK L