YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46136885, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASAAARL CALTCRGASR IQQVPRSRQI IRQKPLAQRA FTTSTIRWAR EEDQRQDDVE  60
   61 EEDYGPVELK KLEAALAEAS TPEGLKQLDQ LAKANGFNSI DQYLQNKLDY HPGWASEDRS 120
  121 TLEDIQKDDK GEKPNKQSFW FDEEDPETNT EELEEFDEDD ITSMAHGKLD EVREMRKYAR 180
  181 LAVWELPLLS KYAKPFEPPT DQEVLRWRYT SYMGESHPAE KKVVVQFAPD DLKLTPVQTD 240
  241 KLKKLSGSRY NPETEIIKMS SDSFEHQAQN KRYLSNLIDD LITAAKDPKD TFEDIPLDTR 300
  301 HHVVKPKPQF PKEWRMTPER RQQLDEHRSR LAIEDVKMAE NGQLIDGVQA IDQHLMTKPT 360
  361 DEQKKAKVAE LVAAAPAKGA SGSRMKR

Type	Start	End	Confidence
Signal Peptide	1	17	0.94
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	387	0.99