YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42544808, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	268	0.94
Transmembrane Helix	269	292	0.85
Non-Cytoplasmic	293	308	0.83
Transmembrane Helix	309	330	0.89
Cytoplasmic	331	366	0.90
Transmembrane Helix	367	386	0.86
Non-Cytoplasmic	387	393	0.78
Transmembrane Helix	394	416	0.87
Cytoplasmic	417	422	0.84
Transmembrane Helix	423	442	0.94
Non-Cytoplasmic	443	447	0.86
Transmembrane Helix	448	468	0.92
Cytoplasmic	469	481	0.85
Transmembrane Helix	482	503	0.90
Non-Cytoplasmic	504	521	0.86
Transmembrane Helix	522	541	0.93
Cytoplasmic	542	551	0.73
Transmembrane Helix	552	573	0.92
Non-Cytoplasmic	574	579	0.77
Transmembrane Helix	580	599	0.93
Cytoplasmic	600	668	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVPGMEGAI HPIQNCTCTI NVKRFSPILS PALVRSFVPI MTALPLRSHP VSSPSPSSSS  60
   61 SSQPLPSSST RPPAPDSPER LLIDDSLPVS NSTPLETGAE PSSSTARVAS TSNPGASGGS 120
  121 QTEAGPSRDR VARSVNEEDE SESDWDIEME PIAGHRRRRS SHNMAVRPAG SPSRLRETSR 180
  181 GPVPVNSTVE PKISEENLDA NGFAIRKDES GDDSFTDEDL QDDEETGLTR KDKQRRQKKR 240
  241 SRNTQLDQRI VRDKKDISKE ERKEADKAVF RSLIVNLVLI LLWYLFSLSI SIYNKWMFDH 300
  301 DRLNFAFPLF TTSMHMVVQF VLSGLVLYFI PSLRPGYGAH QAGVHQSDLG RSRHDDEPKS 360
  361 YGMTKMFYLT RIGPCGAATG LDIGLGNTSL KFISLTFYTM CKSSSLAFVL MFAFAFRLET 420
  421 PTLRLIAIIA TMTMGVVLMV FGEVEFKAGG FALVISAAFF SGFRWALTQI LLLRNPATSN 480
  481 PFSSIFFLTP VMFLVLICLA VPVEGIGNLV EGYKVLANEW GYFMAPLFLL FPGCIAFCMT 540
  541 ASEFALLQRT SVVTLSIAGI FKEVVTISAA ALVFGDRLTP INFVGLLTTM AAIAAYNYIK 600
  601 ISKMREDAQE NVHGRHADED EPGSPGSQTS GIIDRDGDTD AENTGLLRDS IDRLDIDEPG 660
  661 PATASERR