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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14132780
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.72
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSAILESN PNQNNNVTVV LEVLDLHTAK DITDVINILD ELFPKLKSKD FDHQELTLIY  60
   61 DSNDYDDMSI LNAISEIGFP VKILSSTAPQ CKTTVNIQGM TCGACSASIT EALEKTPGVY 120
  121 KASISLVTEN GLIMHSPKLS PENIITIIED CGFDAQIESS KTKQSSAPES SQDQSKRLNT 180
  181 TIGIIGMTCG ACSASITNVL EKLPGVENVS VSLITEEASI VHDSTITTVQ QLKEAIEDCG 240
  241 FTPTFNKSIN LNQYQNTNDS NEEVTLKIVG VNHTTDLIGL RYNIEAYLRS ISGVQKFELT 300
  301 LRGMNASSNI MPTQVGTLIT EEDTIADVKS LVNELVFQYD SDSVGIRDII DGLNTISDNI 360
  361 EFMVINSLDQ SSATQLKLLS KVKDINYWKK IFIQSLLFGI PVLFLNHTKN WPIWKTTMIF 420
  421 PGLYLVSLLE LILSTYIQFY LGSVFIKKFS SFLRKKFKGA TMDVLVCIST MCSYIFSLTT 480
  481 IIVSVWNGQK NGPPPVLFDT LVMLISFVSF GKLLENKAKG ATSTALSSLL SLTPSTCTII 540
  541 NDIPGYQKFI EDQQSLEKSE KSNSLSMQEF PTRVISIDLV QPNDIAIVLP GGKVPADGEI 600
  601 VFGETEIDES LITGEPLPVY KKLKDKVIGG SINGPHLIHI KVTHTGKKSQ LQQIINLVKE 660
  661 SQVNKAPVQK FSDYIAARFV PFVLLLAIFT FILWMIICFT IHQDKLPKIF QNETNGKFFV 720
  721 CLKLSISVIV VACPCALGLA APTAVMVGTG VGAINGVLIK GAKVLEKITG VNIILFDKTG 780
  781 TLTTGEMSLV NFQPIMSKSS ITISDWWKLV GSVECHSEHP IGRALTKSAK TNLNLNFDDD 840
  841 HFDTTVNDIN VLIGLGIQAN VTLANNPQTQ FNVYVGNDKL IESKFPNLLN NIDEKLLHSA 900
  901 NTVSHVIIDG EYSGYIELTD ALKSGSWEVV NYLKTQGYIV GMVTGDNRGA ALKIAQEVGI 960
  961 PFDNVFYEVS PIHKDNVITD LHNRLGGNQS SSVNVAFIGD GINDAPALAK ADIGMAISSG1020
 1021 TDIAIESADI VLIGGRSNQT DLHGVVNALQ ISTATFNRIK INFLWAIIYN IFMLPFAMGC1080
 1081 FLPLNIVLPP VAAGAAMMFS SLSVVFSSLL LKRWTPPKIE TKKTFIDDLE MGNNATGGDG1140
 1141 DGFSLKNGTI EEFNNVKRKS AVNFSSLFAK MTTTRRNRRG GGGGGGRSNG NNNQSYELVS1200
 1201 NRFS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle