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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: RBP2A_PLAF7
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTLFCSIS FCNIIFFFLE LSHEHFVGQS SNTHGASSVT DFNFSEEKNL KSFEGKNNNN  60
   61 DNYASINRLY RKKPYMKRSL INLENDLFRL EPISYIQRYY KKNINRSDIF HNKKERGSKV 120
  121 YSNVSSFHSF IQEGKEEVEV FSIWGSNSVL DHIDVLRDNG TVVFSVQPYY LDIYTCKEAI 180
  181 LFTTSFYKDL DKSSITKINE DIEKFNEEII KNEEQCLVGG KTDFDNLLIV LENAEKANVR 240
  241 KTLFDNTFND YKNKKSSFYN CLKNKKNDYD KKIKNIKNEI TKLLKNIEST GNMCKTESYV 300
  301 MNNNLYLLRV NEVKSTPIDL YLNRAKELLE SSSKLVNPIK MKLGDNKNMY SIGYIHDEIK 360
  361 DIIKRYNFHL KHIEKGKEYI KRITQANNIA DKMKKDELIK KIFESSKHFA SFKYSNEMIS 420
  421 KLDSLFIKNE EILNNLFNNI FNIFKKKYET YVDMKTIESK YTTVMTLSEH LLEYAMDVLK 480
  481 ANPQKPIDPK ANLDSEVVKL QIKINEKSNE LDNAISQVKT LIIIMKSFYD IIISEKASMD 540
  541 EMEKKELSLN NYIEKTDYIL QTYNIFKSKS NIINNNSKNI SSKYITIEGL KNDIDELNSL 600
  601 ISYFKDSQET LIKDDELKKN MKTDYLNNVK YIEENVTHIN EIILLKDSIT QRIADIDELN 660
  661 SLNLININDF INEKNISQEK VSYNLNKLYK GSFEELESEL SHFLDTKYLF HEKKSVNELQ 720
  721 TILNTSNNEC AKLNFMKSDN NNNNNNSNII NLLKTELSHL LSLKENIIKK LLNHIEQNIQ 780
  781 NSSNKYTITY TDINNRMEDY KEEIESLEVY KHTIGNIQKE YILHLYENDK NALAVHNTSM 840
  841 QILQYKDAIQ NIKNKISDDI KILKKYKEMN QDLLNYYEIL DKKLKDNTYI KEMHTASLVQ 900
  901 ITQYIPYEDK TISELEQEFN NNNQKLDNIL QDINAMNLNI NILQTLNIGI NACNTNNKNV 960
  961 EHLLNKKIEL KNILNDQMKI IKNDDIIQDN EKENFSNVLK KEEEKLEKEL DDIKFNNLKM1020
 1021 DIHKLLNSYD HTKQNIESNL KINLDSFEKE KDSWVHFKST IDSLYVEYNI CNQKTHNTIK1080
 1081 QQKNDIIELI YKRIKDINQE IIEKVDNYYS LSDKALTKLK SIHFNIDKEK YKNPKSQENI1140
 1141 KLLEDRVMIL EKKIKEDKDA LIQIKNLSHD HFVNADNEKK KQKEKEEDDE QTHYSKKRKV1200
 1201 MGDIYKDIKK NLDELNNKNL IDITLNEANK IESEYEKILI DDICEQITNE AKKSDTIKEK1260
 1261 IESYKKDIDY VDVDVSKTRN DHHLNGDKIH DSFFYEDTLN YKAYFDKLKD LYENINKLTN1320
 1321 ESNGLKSDAH NNNTQVDKLK EINLQVFSNL GNIIKYVEKL ENTLHELKDM YEFLETIDIN1380
 1381 KILKSIHNSM KKSEEYSNET KKIFEQSVNI TNQFIEDVEI LKTSINPNYE SLNDDQIDDN1440
 1441 IKSLVLKKEE ISEKRKQVNK YITDIESNKE QSDLHLRYAS RSIYVIDLFI KHEIINPSDG1500
 1501 KNFDIIKVKE MINKTKQVSN EAMEYANKMD EKNKDIIKIE NELYNLINNN IRSLKGVKYE1560
 1561 KVRKQARNAI DDINNIHSNI KTILTKSKER LDEIKKQPNI KREGDVLNND KTKIAYITIQ1620
 1621 INNGRIESNL LNILNMKHNI DTILNKAMDY MNDVSKSDQI VINIDSLNMN DIYNKDKDLL1680
 1681 INILKEKQNM EAEYKKMNEM YNYVNETEKE IIKHKKNYEI RIMEHIKKET NEKKKKFMES1740
 1741 NNKSLTTLMD SFRSMFYNEY INDYNINENF EKHQNILNEI YNGFNESYNI INTKMTEIIN1800
 1801 DNLDYNEIKE IKEVAQTEYD KLNKKVDELK NYLNNIKEQE GHRLIDYIKE KIFNLYIKCS1860
 1861 EQQNIIDDSY NYITVKKQYI KTIEDVKFLL DSLNTIEEKN KSVANLEICT NKEDIKNLLK1920
 1921 HVIKLANFSG IIVMSDTNTE ITPENPLEDN DLLNLQLYFE RKHEITSTLE NDSDLELDHL1980
 1981 GSNSDESIDN LKVYNDIIEL HTYSTQILKY LDNIQKLKGD CNDLVKDCKE LRELSTALYD2040
 2041 LKIQITSVIN RENDISNNID IVSNKLNEID AIQYNFEKYK EIFDNVEEYK TLDDTKNAYI2100
 2101 VKKAEILKNV DINKTKEDLD IYFNDLDELE KSLTLSSNEM EIKTIVQNSY NSFSDINKNI2160
 2161 NDIDKEMKTL IPMLDELLNE GHNIDISLYN FIIRNIQIKI GNDIKNIREQ ENDTNICFEY2220
 2221 IQNNYNFIKS DISIFNKYDD HIKVDNYISN NIDVVNKHNS LLSEHVINAT NIIENIMTSI2280
 2281 VEINEDTEMN SLEETQDKLL ELYENFKKEK NIINNNYKIV HFNKLKEIEN SLETYNSIST2340
 2341 NFNKINETQN IDILKNEFNN IKTKINDKVK ELVHVDSTLT LESIQTFNNL YGDLMSNIQD2400
 2401 VYKYEDINNV ELKKVKLYIE NITNLLGRIN TFIKELDKYQ DENNGIDKYI EINKENNSYI2460
 2461 IKLKEKANNL KENFSKLLQN IKRNETELYN INNIKDDIMN TGKSVNNIKQ KFSSNLPLKE2520
 2521 KLFQMEEMLL NINNIMNETK RISNTAAYTN ITLQDIENNK NKENNNMNIE TIDKLIDHIK2580
 2581 IHNEKIQAEI LIIDDAKRKV KEITDNINKA FNEITENYNN ENNGVIKSAK NIVDEATYLN2640
 2641 NELDKFLLKL NELLSHNNND IKDLGDEKLI LKEEEERKER ERLEKAKQEE ERKERERIEK2700
 2701 EKQEKERLER EKQEQLKKEE ELRKKEQERQ EQQQKEEALK RQEQERLQKE EELKRQEQER2760
 2761 LEREKQEQLQ KEEELKRQEQ ERLQKEEALK RQEQERLQKE EELKRQEQER LEREKQEQLQ2820
 2821 KEEELKRQEQ ERLQKEEALK RQEQERLQKE EELKRQEQER LERKKIELAE REQHIKSKLE2880
 2881 SDMVKIIKDE LTKEKDEIIK NKDIKLRHSL EQKWLKHLQN ILSLKIDSLL NKNDEVIKDN2940
 2941 ETQLKTNILN SLKNQLYLNL KRELNEIIKE YEENQKKILH SNQLVNDSLE QKTNRLVDIK3000
 3001 PTKHGDIYTN KLSDNETEML ITSKEKKDET ESTKRSGTDH TNSSESTTDD NTNDRNFSRS3060
 3061 KNLSVAIYTA GSVALCVLIF SSIGLLLIKT NSGDNNSNEI NEAFEPNDDV LFKEKDEIIE3120
 3121 ITFNDNDSTI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle