YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8571458
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNICLICDF FYPCLGGVEM HIFQLGLCLI ERGLKVIIIT HKYQGRSGVR YMTNGLKVYY  60
   61 CPFIPAIQTV VLFTYVGTLP IFRQILLREE IHIVHSHAAT SYLGGELLLH AKSMGFKTVF 120
  121 TDHSLFAFND AASFHVNKIL KYILCEIDHS ISVSHVSKEN LSMRASLDPR NISVIPNAVD 180
  181 CSRFTPNPQK RYPLNTINIV VICRMTFRKG VDLLVDVLQI ICKQHPEIYF IIGGDGPKKK 240
  241 ILEETIQRYN LQNQTELLGS VPGHQVKDVL NRGHIFLNTS LTEAFCIAIV EAASCGLCVV 300
  301 STNVGGISEV LPQNMVLYAD PTPEDISHKI TQAIPIAKNF YVYQQHELVK KMYSWEQVAE 360
  361 RTEKVYYKIL QTQNQTILKR FKDCYSNGQI YGLFLMILLI FDLIFLMILD FLQPHKGIHK 420
  421 PGIFNQIYKN QKEKVWGSSI QS

Type	Start	End	Confidence
Cytoplasmic	1	57	0.55
Transmembrane Helix	58	79	0.65
Non-Cytoplasmic	80	389	0.75
Transmembrane Helix	390	412	0.87
Cytoplasmic	413	442	0.71