YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14860982
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPQRPGRH ELSQQPSFRD SYHRRRHDIE SGGYTDSPAS PSSQSRRNQG YFSTGSPSPS  60
   61 SPQEYDSMSS PRGLNRKRSL VRPERTRMNR DHPNYHYRQH AQNMPTYPST TGNEPVMEDP 120
  121 IEAETVSSGS TDTKSLKREK ASSGGGGIPS LDYSRGPHPA ARSSRPAGGA GGGKNKDDVR 180
  181 RKLSRKASRS HREEERRRQK ELDAIRPPSL WNVYCAMVTF WCPDFLLKCF GMPAKAQRRA 240
  241 WREKMGLISL ILLICGFVGF LTFGFTQVVC GSPGVRLKVN HVGLGYLIIH GKAYDLVESS 300
  301 HPAAIGIPGG SNVIFDLPEK HGGKDASFLF QNVNGECKGL ITAVENSEIP TNSEKEMGWY 360
  361 FPCSLFNQDG STRPNFTEPR YTGYACHTTG KARRALYNLK SAGEVYFTWD DVKNKTRNLV 420
  421 VYSGNVLDLD LLAWFNTSQV VYPARFDDLR TNPDLRGVDI THMFQSGEDK KIARCLSEIV 480
  481 KVGSVDTETV GCIASKVVLY ISLVFILSVV SVKFFLALGF QWFIARRFAA PKTAIDPQSK 540
  541 ERKRQIEDWS DDIYRPGPRL NDPAAPGKRG SSLFPTTSRF SSPYVMGAQK QRPVPTTMAS 600
  601 QNAGSRLNAP SAMYKAGQNS SQATLSAEPF NRQSVAASRS SLMVPDPRYS TISDIEGQGP 660
  661 AELIHEAVVP QPPPEWQPFG YPLAHAICLV TAYSEGEEGL RTTLDSIAMT DYPNSHKTII 720
  721 VICDGMIKGK GESLTTPEIC LGMMGDYAVL PEDVQAFSYV AVASGAKRHN MAKVYAGFYD 780
  781 YGENSVVPRE KQQRVPMMVI VKCGTPDEAK NSKPGNRGKR DSQIILMSFL QKVMFDERMT 840
  841 ELEFEMFNGL WKITGISPDF YEIVLMVDAD TKVFPDSLTH MISAMVSDPE IMGLCGETKI 900
  901 ANKAQSWVTM IQVFEYFISH HLSKSFESVF GGVTCLPGCF CMYRIKAPKG GQNYWVPILA 960
  961 NPDVVEHYSE NVVDTLHKKN LLLLGEDRYL STLMLKTFPK RKQVFVPQAV CKTTVPDEFK1020
 1021 VLLSQRRRWI NSTVHNLMEL ILVRDLCGTF CFSMQFVVFM ELVGTLVLPA AISFTFYVVI1080
 1081 ISIIKKPVQI IPLILLALIL GLPAVLIVVT AHRLSYVMWM FIYLLSLPIW NFVLPTYAYW1140
 1141 KFDDFSWGDT RKTAGEKTKK AGIEYEGEFD SSKITMKRWR DFEKGIVYAV PPLVRG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle