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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9082308
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNRLPNPV VDDDPEPVMD PQNLHPHRRS SPGRPLYQLS DDPYQQYGHI PMPSADRLLD  60
   61 QPTYSVDNIQ NSYGHNETFE EHNPYRPSPG PPRDYTLSPE AHHDSYYNPP YQPTPSTVDT 120
  121 YDLTNYPQQY HDDHAPILQS DSPFGETPHS ETGGYNDGSV ATLPTPSPAP IRRWKTVKEV 180
  181 QLFNGNLVLD CPIPPRLLSQ VNHAAPPERD EFTHMRYSAA TCDPADFYNE RFTLRQRLFA 240
  241 KPRHTELFIV VTMYNEDDFL FARTMIGVFK NIDYMCSRTN SKTWGKEAWK KIVVCVVSDG 300
  301 RAKINPRTRA VLAGLGVYQD GIAKQQVNGK DVTAHIYEYT TQMGMELKGN QVLLKPRRGM 360
  361 PVQMLFCLKE KNQKKINSHR WFFQAFGRVL DPNICVLIDA GTKPGKDSIY HLWRAFDLEP 420
  421 MCGGACGEIK VMLDHGKKLI NPLVATQNFE YKMSNILDKP LESAFGFISV LPGAFSAYRY 480
  481 VALQNDKNGQ GPLEKYFAGE KMHGANAGIF TANMYLAEDR ILCFELVSKR NCRWILQYVK 540
  541 SANGETDVPD RMAEFILQRR RWLNGSFFAA VYAITHFYQI WRSDHSASRK FMLLIEFIYQ 600
  601 TINMLFAWFA IGNFFLVFRI LTTSLGTKDL LGQVGNVLGV VFEWLYLATL VTCFVLALGN 660
  661 RPQGSNKLYM TMTCFWVIIM IYLTFAAIYV TVRSIQHEVA DGSFSFSAIF SNLQFFSMIV 720
  721 SLMSTYVLWL VASILFFDPW HMFTSFLQYI LLTPTYINVL NIYAFCNTHD ITWGTKGDDK 780
  781 PEKLPSANLK PGGKVDVEIP QDDGDLNAQY DAELQKFASK PPKEVRKTTE EEKQEDYYKG 840
  841 FRSSVVLVWI FCNFALGALV LNAVGLERID VNESTETQRS AIYMAVVLWS VAGLSLFRFI 900
  901 GAMWFLVVRM VSPYPNVDFH YDCTTDTGAI 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle