YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPSD_CALPD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGTEGPNFY VPFSNKTGVV RSPFEEPQYY LAEPWQFSCL AAYMFMLIVL GFPINFLTLY  60
   61 VTIQHKKLRT PLNYILLNLA IADLFMVFGG FTTTLYTSLH GYFVFGPTGC DLEGFFATLG 120
  121 GEIALWSLVV LAIERYIVVC KPMSNFRFGE NHAIMGVAFT WVMALACAAP PLVGWSRYIP 180
  181 EGMQCSCGID YYTLKPEVNN ESFVIYMFVV HFTIPMVVIF FCYGQLVFTV KEAAAQQQES 240
  241 ATTQKAEKEV TRMVIIMVIA FLICWLPYAG VAFYIFTHQG SNFGPILMTL PAFFAKTSAV 300
  301 YNPVIYIMLN KQFRTCMLTT LCCGKIPLGD DEASATASKT ETSQVAPA

Type	Start	End	Confidence
Non-Cytoplasmic	1	39	0.97
Transmembrane Helix	40	63	0.90
Cytoplasmic	64	73	0.91
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	114	0.86
Transmembrane Helix	115	138	0.84
Cytoplasmic	139	152	0.89
Transmembrane Helix	153	173	0.94
Non-Cytoplasmic	174	207	0.91
Transmembrane Helix	208	229	0.89
Cytoplasmic	230	252	0.92
Transmembrane Helix	253	276	0.88
Non-Cytoplasmic	277	285	0.82
Transmembrane Helix	286	307	0.81
Cytoplasmic	308	348	0.90