YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38648899
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTAKVTPSL VFAVTVATIG SFQFGYNTGV INAPETIIKD FLNYTLEERL EDLPSEGLLT  60
   61 TLWSLCVAIF SVGGMIGSFS VGLFVNRFGR RNSMLLVNLI AILGGCLMGF AKIAESVEML 120
  121 ILGRLIIGIF CGLCTGFVPM YIGEVSPTAL RGAFGTLNQL GIVVGILVAQ VFGLDFILGS 180
  181 EELWPGLLGL TIIPAILQSA ALPFCPESPR FLLINRKEED QATEILQRLW GTPDVIQEIQ 240
  241 EMKDESIRMS QEKQVTVLEL FKSPSYFQPL LISVVLQLSQ QFSGINAVSI CPGPGLETPS 300
  301 SILLKSLAVV GRLACVCRLE LLQKLEQEGH

Type	Start	End	Confidence
Cytoplasmic	1	7	0.84
Transmembrane Helix	8	26	0.87
Non-Cytoplasmic	27	60	0.91
Transmembrane Helix	61	85	0.90
Cytoplasmic	86	93	0.87
Transmembrane Helix	94	114	0.94
Non-Cytoplasmic	115	120	0.85
Transmembrane Helix	121	143	0.92
Cytoplasmic	144	153	0.83
Transmembrane Helix	154	174	0.91
Non-Cytoplasmic	175	183	0.74
Transmembrane Helix	184	206	0.86
Cytoplasmic	207	330	0.91