YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19743668
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.83
Transmembrane Helix	21	37	0.97
Non-Cytoplasmic	38	49	0.58
Transmembrane Helix	50	70	0.88
Cytoplasmic	71	74	0.60
Transmembrane Helix	75	93	0.82
Non-Cytoplasmic	94	100	0.69
Transmembrane Helix	101	121	0.93
Cytoplasmic	122	134	0.77
Transmembrane Helix	135	155	0.91
Non-Cytoplasmic	156	168	0.87
Transmembrane Helix	169	187	0.90
Cytoplasmic	188	195	0.73
Transmembrane Helix	196	219	0.88
Non-Cytoplasmic	220	239	0.89
Transmembrane Helix	240	264	0.81
Cytoplasmic	265	282	0.86
Transmembrane Helix	283	305	0.81
Non-Cytoplasmic	306	312	0.78
Transmembrane Helix	313	335	0.80
Cytoplasmic	336	339	0.54
Transmembrane Helix	340	361	0.74
Non-Cytoplasmic	362	381	0.71
Transmembrane Helix	382	402	0.89
Cytoplasmic	403	411	0.72
Transmembrane Helix	412	430	0.94
Non-Cytoplasmic	431	433	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWTERIFKL REHNTNVRTE LVAGLTTFLS MAYIMFVNPS ILGDAGMPKG SVFVATCLIA  60
   61 ALGSTIMALY ANYPIALAPG MGLNAYFAYV VVLKMGYTWE AALGAVFVSG CLFLICTMLG 120
  121 LRELIIKGIP QSIRVSITVG LGLILALIAL KTAGVVAADQ NTYVTLGDLH KPEVIMALLG 180
  181 FLLIVVLDRL KVPGALLIGI LAVTVASFFF GGNTFHGIFS APPSIEPTFM KLDIKTALTT 240
  241 GFLNVVLVFF LVELFDATGT LMGVARRAGL LVPERMGRFN RSLLADSGAI FVGSILGTSS 300
  301 TTAYVESAAG VQAGGRTGLT ALTVAMLFLA CLFIAPLAGV VPGYATAPAL LFVACLMLRD 360
  361 LTEVQWDETT EAIPAVVTAL MMPFTYSIAN GLAFGFITYA VLKLFTGKVK EVHWIMWVIA 420
  421 ALFLFKFIYV GGH