YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38537139
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAQNPQHGH PVEISVDILD GEMSGGSKGC GEAPCGFSDT GNNSKNAKER SASMRKLWIS  60
   61 VALCIVFMSA EIAGGIEANS LAILTDAAHL LSDVAGFAIS LFSLWAAGWE ATPRQSYGFF 120
  121 RIEILGALVS MQLIWLLAGI LVYETIIRLI HGTSEVNGFL MFLVAAFGLL VNIIMALVLG 180
  181 HDHGPDHDHK HGTGHSHGTT VSTHNHHHVE HPKHDDNHHD HSNNEHHHAH EDHVEPLLDK 240
  241 GEAMHEKKQR NINVQGAYLH VLGDSIQSIG VMIGGAIIWY KPEWKIIDLI CTLIFSVIVL 300
  301 GTTIKMLRNI LEVLMESTPR EIDATKIEKG LLEMEEVMAI HELHIWAITV GKILLACHVK 360
  361 IMPEANADMV LDNVISYLRR EYNISHVTIQ IER

Type	Start	End	Confidence
Cytoplasmic	1	56	0.99
Transmembrane Helix	57	76	0.95
Non-Cytoplasmic	77	86	0.80
Transmembrane Helix	87	109	0.89
Cytoplasmic	110	118	0.89
Transmembrane Helix	119	143	0.81
Non-Cytoplasmic	144	158	0.81
Transmembrane Helix	159	180	0.93
Cytoplasmic	181	256	0.98
Transmembrane Helix	257	279	0.90
Non-Cytoplasmic	280	285	0.82
Transmembrane Helix	286	307	0.91
Cytoplasmic	308	393	0.92