YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P24D3_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTAKMRRE FPTAFLLLFL VPVMIPVGEA VWLDVPPTGT KCVSEEIQSN VVVLADYLII  60
   61 SEDHEVMPTI SVKVTSPYGN NLHNMENVTH GQFAFTTQES GNYLACFWAD EKSHGNKNVS 120
  121 INIDWRTGIA AKDWASIAKK EKIEGVELEI RKLEGAVEAI HENILYLRNR EADMRTMSEK 180
  181 TNSRVAWYSI MSLGVCIAVS GFQVLYLKQY FEKKKLI

Type	Start	End	Confidence
Signal Peptide	1	30	0.95
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	184	0.99
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	217	0.92