YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-6
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLDRIMFLL FFILSLVIGS FSEYLDDKYY STNSIDVVCK PCAVPSSNSV IWLPASRPPC  60
   61 LHPGQPIIHW PDLSDNLACP VPGLPDSVHS SQISLLEGEG LLLTKERICF FDGPIDFHYD 120
  121 YVCDGKLYRS KMRIGHSIAS KKKLETRRTK RWARRRNPDA NAVHFQQEKY VKELPEDTPI 180
  181 ETIIASVKAS HASSQPLYYS MVAPQDSRSQ NLFTLDTMSG EIRLAKSMDR EVLDKHILKV 240
  241 TAYERVDPTI SASTTVVVHV LDVQDNSPIF EKDSYFGEIR EDAPIGTTVL SVFARDLDSG 300
  301 ENGEIEYSLG EGNGKNLLAI NAKSGVIQTA APLDRETLSL IRLDVIASDK GTPKRESTAM 360
  361 VEITVVDVND NAPVFASDSY NVTILENITI PAVIATVKAT DEDFGTNGKV HYSMASSSGI 420
  421 GGLTIDYSTG EVTLRERIDA KNSPITAVIR AKDGAQPALS STVPLTINVI DINDHAPTLI 480
  481 AAQKMITLEE NVAIGEEVGR VYAIDEDSGP NGIIKYSMEG SEDFIIDEDS GLIKTTKLLD 540
  541 RETTARYSLK VTARDMGTPS LNTSTTIAVV LKDINDNAPT FDKKEYNVTI SEEMPRGSQI 600
  601 ITLKAVDNDE DQKITYRIEE ADREVFSILD IGDQGAILSV SGELKRQDHK VRVEISATDQ 660
  661 GGLQGRCVVN VFIDDVNSAP YFNDHPFSVK IPEHSPIGYP VITLKAEDHD RGDNARIVYS 720
  721 IDSSQFFRID PSSGDISVSS DLDREDRATF SVIVTASDHA SPPLNTSTQI EVILDDINDN 780
  781 SPQFTSSSYA ATISEDIPVG TSFLQVSAID ADIGPNGIVD YFLNESSSSP SIQLFRLDRT 840
  841 SGTLRVSSKL DREQFAVIVL PIFARDRGTP SLSAASEITL TLSDVNDNAP TFEQLSYDLY 900
  901 IAENSPVGST VGTIVARDAD EGDNADISFR IFGGADAKLF DIEEDAEQNG VVRILTRAEF 960
  961 DYEAKANKFF FELQASSGQL SSTVPVRIHV SDVNDNKPAL KDFVILMNRF DNVQMARQIG1020
 1021 FIPAFDPDQN ATLEYFLEEN DLIEAEKYTG KILVKQEWKR NMDVSFKTCV SDGANTECST1080
 1081 CRFIHVLVEP EWLSESFTLS LARMTVDDFW DPLVFQRFRD AMSTLSNWKP SDIHVIGVKQ1140
 1141 HLDDVIYINI AITDHGRVVR GWRAIELVKE SIKKLEKMTL LQVEVIRDES CANEPCSHMA1200
 1201 KCRQTQKFVG EMKAHETDNF IARTLNTVNT FVCECPSGFT SSGAHGDCDT RIDECYRGRC1260
 1261 SNNSTCVAFE NTYQCECKPG WIGRHCEISV HALTCVPGYC MSDSLCELDG NQMKCRHCKY1320
 1321 HGEDTDERCR LRSVSFDGEG LLNVNLDLPR TQWTMKFRVS TIAHNGVLVF TGDKRSDFVE1380
 1381 VSVVDRVLKV QFSLGGEKID AKMENDVENR INDGEWHTVA LEYSNKQITM SLDDCETNPS1440
 1441 LLLNTSPNCA IRAKLNLEKK CEDPTVPCYR YLDISNGLFL GGRPGTSKQI EKAFSGCISD1500
 1501 LSVDKEDVDF STIKEMHKVG QVHEGCKHRK DFCSTSDGQC SATSKCVNRW GGRICSCPQS1560
 1561 VHSTGECVGA LGTQDLRGHS LFEEESFVLY QPSQVSVPFE VSFEFRTSRA DMQVFALEFT1620
 1621 QRSVHYNLEV DDGTLKYNIG DSEVELPAPE VTSKHWMNVV IKFEADSVAT SINGIYSAEA1680
 1681 KASISDMNLE SLYFGIAPGT GHPSRFEGCI RNVLVDGRSI SVKKKGKTRA GCVVPNRCSV1740
 1741 DSICPAESTC HRAWNKHKCK CHKSFVGDTC LPVCSVANVC SSGTCVSSNT TAGYECICPA1800
 1801 GKTGKNCQLE APKQMCPSGW WGTFPRCRRC SCAQTKDYEA QCDKKTGACQ CKKSHFSTIN1860
 1861 GCVKCECGFG ADSTECSADG HCKCNGDAVG RRCDRCSRFD HQLDSKTLKC RPVSGKCPSE1920
 1921 IEYSIQWPAS QKGSIVRQSC PVGESGLATR KCLETGRWSD VNAWNCTRPE YSIMVNKFEI1980
 1981 LEPSKLLTMV ANATNTESSI RGRNQQIAAE ALSRLVDYEQ SMPMKGRAHI KDMKFTEKLI2040
 2041 ESLGRVMSEQ PADEYSTLIS KLWNYAETVA EIHENVNFLS PFFVANDHIV FASDKLDFGN2100
 2101 ILPKFNNFVD LRPTGFPRVR AIVTGTTQVV YSIVPYPRCN RCENPMIAIV ANTSDPVIVE2160
 2161 FEIEEDDGWK YPECVRFDEK SGTWTARGAA LIGLNLTHAA CEYNRIGVFT MFVNDQSSSI2220
 2221 VRVAQMDNMT SPAIAGVALF LCFLSILLTL SRRSLKTHSV RIGFILFFAI NILNLFFVHK2280
 2281 TAINQAYCPV RNAMLSFTSS APFAWLFLYG LYIYRMLADG SSSPSLTTSL LVGIVFPCLI2340
 2341 SFTTFFVTDQ CSLSPHLWLF WCIILPIGLF LLLSFYAAAT SVLVSLHKKY DVFVAKYNVK2400
 2401 RAVFQHFILT IFTLGMTLTG LFANQLPLPM EIMEISQSII YLIAALVIFL WCVCDITTKA2460
 2461 SDSNPSMWLD NQKSVMAEST MADPQCASPL LSPRHQHHEV PMDSEWVPDV NPSNHYHTSI2520
 2521 NEPDTPRRLL LPQNRDVINI LSSPDQILNE GVGHVYRNNM GSLPRLRSAQ DEADDAYYTY2580
 2581 TASRKYKNTT STFNRE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle