YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCHL_MOUSE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGASASSPAT AVNASNASDG QPASPPSGCP MHKGQRKGCP VTAATSDLTS ESKAHTVPAH  60
   61 QDRAYDYVEC PVTGARAKDK ESLDPSNLMP PPNQTPSPDQ PFTLSTSREE SSIPRADSEK 120
  121 KWVYPSEQMF WNAMLRKGWK WKDDDISQKD MYNIIRIHNQ NNEQAWKEIL KWEALHAHEC 180
  181 PCGPSLVRFG GKAREYSPRA RIRSWMGYEL PFDRHDWIIN RCGTEVRYVI DYYDGGEVNK 240
  241 EYQFTILDVR PAFDSFSAVW DRMKVAWWRW TS

Type	Start	End	Confidence
Signal Peptide	1	17	0.56
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	272	0.99