YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSL5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.51
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMFYSSRFL FFFTIVPLLV SIALYQLDTF DPAPVPSEAY ASSTTSIPPL ISDKYLTGAE  60
   61 FIGVGLLDKP EDIAYHQDSN LIYTGCIDGW VKRVSVHDSA NDSVVEDWVN TGGRPLGIAF 120
  121 GVHGEVIVAD AYKGLLNISG DGKKTELLTD QAEGVKFKLT DVVAVADNGV LYFTDASYKY 180
  181 TLHQVKFDIL EGKPHGRLMS FDPTTRVTRV LLKDLYFANG VSMSPDQTHL IFCETPMRRC 240
  241 SKYYINEERV EVFIQGLPGY PDNIRYDGDG HYWIAMVSGA STLWRLSMKY PFLRKITAIA 300
  301 AKYGVELMFM KNAGVLQVDL DGNPIAYYHD QRLSHITTGI KIGNYLYCGN ILHSYIIRLD 360
  361 LLKYPAQKKK L

Type	Start	End	Confidence
Cytoplasmic	1	8	0.45
Transmembrane Helix	9	26	0.50
Non-Cytoplasmic	27	371	0.97