YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HRD1B_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQLKVYAGL STLATLVVIY HAFSSRGQFY PATVYLSTSK INLVVLLNMG LVLMLSLWNL  60
   61 VKIVFLGSLR EAEVERLNEQ AWRELMEILF AITIFRQDFS VGFISLVVTL LLIKGLHWMA 120
  121 QKRVEYIETT PSVTLLSHVR IVSFMVFLLI LDCLLTYSSI QQLIQSRKAS MSVFFTFEYM 180
  181 ILATTTVSII VKYAFYVTDM LKEGQWEGKP VYTFYLELVR DLLHLSMYLC FFLMIFMNYG 240
  241 LPLHLIRELY ETFRNFKIRV TDYLRYRKIT SNMNDRFPDA TPEELSSNDA TCIICREEMT 300
  301 SAKKLVCGHL FHVHCLRSWL ERQNTCPTCR ALVVPAENAT STASGNRGPH QESLQQGTGT 360
  361 SSSDGQGSSV SAAASENMSR HEARFQAAAS AASIYGRSIV YPSSANTLVW SQGNSLLPQT 420
  421 EVEAQRRFLE SQIEVLTNQL RLLEKPTTVD TKGKSVADTA

Type	Start	End	Confidence
Cytoplasmic	1	5	0.88
Transmembrane Helix	6	24	0.90
Non-Cytoplasmic	25	42	0.80
Transmembrane Helix	43	61	0.93
Cytoplasmic	62	98	0.78
Transmembrane Helix	99	118	0.86
Non-Cytoplasmic	119	135	0.89
Transmembrane Helix	136	158	0.86
Cytoplasmic	159	172	0.82
Transmembrane Helix	173	196	0.87
Non-Cytoplasmic	197	221	0.92
Transmembrane Helix	222	246	0.84
Cytoplasmic	247	460	0.91