YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oct-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.53
Transmembrane Helix	20	41	0.83
Non-Cytoplasmic	42	47	0.41
Transmembrane Helix	48	67	0.93
Cytoplasmic	68	105	0.56
Transmembrane Helix	106	127	0.89
Non-Cytoplasmic	128	132	0.83
Transmembrane Helix	133	153	0.95
Cytoplasmic	154	220	0.97
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	257	0.94
Transmembrane Helix	258	279	0.90
Cytoplasmic	280	287	0.83
Transmembrane Helix	288	306	0.95
Non-Cytoplasmic	307	312	0.79
Transmembrane Helix	313	334	0.88
Cytoplasmic	335	345	0.76
Transmembrane Helix	346	368	0.85
Non-Cytoplasmic	369	374	0.75
Transmembrane Helix	375	395	0.94
Cytoplasmic	396	414	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRTIVTEWN RVCDNNWSRA HVHMSYSLGY LVGCFVGGFI SDRYGRKTAI TGFGILTMLF  60
   61 GFLLTYSKEF EIFLVVRFLL AATNEAADLA AYVLCMEVTG TKYRSIVGSL IQAPWACGYA 120
  121 FLALIAYLTK SWTMIHLICV LLHIISLMLL YFLPESPRWL ILNNKTKQAE KIIREACHYN 180
  181 KSRLPSDLGL VRHAEKKKWM KHNEKPSYFH LFRSSELRFR NVVLFIVWIA TALVYYGMVI 240
  241 ALSDQSSPGR RVFDGNFFLN NAMAGAIELP TLVFCVFLLR MGRKRSQMLV LFGSGLFLLT 300
  301 SVVMVYRKQS TLALIFMLLS KACIQGSFNI LYIFTSELNP TVVRNSAVGI SSMVARMGAG 360
  361 ASGYIAILSD VTMPLVPMTI FACFSLLAGC LVLLLPETQG LPLPDTILVI VLFF