YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE47388
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFLEFAKP KMLDIKRKIN FASGEKTDES VQPQQQTEQS SAQQTTPSAK AVSNPFITPL  60
   61 TESTPGMSES WVELAPSRTS LCSSVDINMV IIDEKDKDSR LSPVSIAQSP HVEFESLEQV 120
  121 KYKLVREMLP PGKNTDWIWD WSSRPENTPP KTVRMVQYGS NLTTPPNSPE PELYQYLPCE 180
  181 SDSLFNVRVV FGFLVTNIFS FVVGAAVGFA VCRKLIKHHR Q

Type	Start	End	Confidence
Non-Cytoplasmic	1	189	0.95
Transmembrane Helix	190	212	0.92
Cytoplasmic	213	221	0.88