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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: itr-1
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKSSMALPS RKLTIANSID HGNNGNLHIG DIISLYTESS SNQEQRGFLS TLGLVDDRCI  60
   61 VELKDGRPES PPKKFRDCLF KVCPVNRYAA QKHLWTEQKR FQTGDSMFDD DLMNKLKVAA 120
  121 DKEREENESE FQKTLGNVIQ YGSMVQLLHV KSNKYITVQK NSPAKRERNA MKVYLDRAGN 180
  181 EGSWFIIEPA YKHYAIGDNV SAGNKISLIP NSVSTTQAGH VKSQLHLSSF NLLDHQSAAE 240
  241 VNCLNEPTEW QVFMFLLFDE NQQNSVKSGD VVRLFHADQQ TFLTLDTIPK QNPPTDVVFL 300
  301 RMTNRPSAAD ATSSRALWEV QVVQTNAYRG GTAKWNKAYR FKHLATDMYL SAEPSQVQVK 360
  361 PAMNGRRASL IYSKTNNPMA MYSDGPNGVT NESTDTTQQN IPSVWVLGPT KSEFPEEDAN 420
  421 LLFQLDPSTF MKSNKEVPRR SYVRLLHQSS DKWVHATNAT EKQNLHYSSK NEKGWVKVIC 480
  481 EKNRVDKETF ALLPVNPDEV RDLDFANDAC KALRNFIKLI KIGQVISKES INSTTQLLID 540
  541 CILFVTNSSD HLADPLKISD FSPSRDRQKL LREQEVLNQV FLLLKAPFLP RQGTTELGPL 600
  601 LSSPSELSDS RNEIFKTMFQ LCYCLLKYSQ VSYRKNQEFL AEKFGEIQEQ IGFDLMAEDT 660
  661 MTAVLHNNPK LLEKYVKTPH VERFVELVRN NRQGKFLDYL ADLCVCRGEA NKKIQELICT 720
  721 SVLSSKHRDI FMDTKIIDGE IEVGWAPNFR KLVDIAEGAK SNSDDAEHLD YYRHQLDLLS 780
  781 QMCQEQQYLA IDPPPERRLM NISQQLPAEL VLQCMSDNRL PYDLRGSFTR LMLHLHVVRG 840
  841 SPMSAIRHAR LWWSIPENVN VSTYESVSVE AYSDGSRMRI GEGIAHKVLA TVETYLMGLR 900
  901 NQSMEERQSV NSSKLTYEIV NLAKALAQFN FYSFNDLLQL TQNLLAIINE GPATEQVPSH 960
  961 RAMVNAIRNM SKSMMRGGNK ENSKDLAKTP SVTAEEAGRT KEGRALNVKT KLIVAEILQF1020
 1021 VMDVRRDYRI TMALSWFKNV FPCDEDGSLM HSASINERMA SELYDAIYRS SGHELHLDGR1080
 1081 DGQLLLAILL QMTMSDYPPL TSIALKVFFR HFTQYQELLE DLKQVQLLVS NNDVENYRQI1140
 1141 DRDLFILKNL TEKSELWVHG DRHHSIDTKE VDEKERTTEH DLLDHDLKSP RAFDSGDSME1200
 1201 ALMAVLNEHY PSIRNECLQL LNRLLIKDDR NDAAVALQEL SDKAPLIAYP LIRQMLVRLT1260
 1261 GMCYRKGDPK PDTMNQQLLK NMRVYEVVLE FISVPHDKKH DHDMMKLITL SHEFLRSFCK1320
 1321 TNKENQSRLY KFISYEKDAK EGMLRVETIE EVGTLVAIFR NNRELASNVP EELIAHIVGL1380
 1381 IEHNSRNPIF LELLQALVCV YDKEIESGQE KVANEICAAS DEVRQLYVDN ASFEELEAMM1440
 1441 KDEKESKGRS SDSRRKLKYH IELVRLLAMC TRGKNGNTEL KCASQIPMDH IVRVVTAKQC1500
 1501 LVEVKTVYLQ LLLHCYIDTD AEMKDAYKTE YVDHILNNLL EDIRSLRVEK LTGAETATLE1560
 1561 HYICHTVTEV LIKFFEAPYS ALQQAKVDVH HHKKTFSEVL LELTYLEKGK LRGSKSSRNW1620
 1621 YRVAECIKRL TKWAEEHNIT LPATLAGPQM SGQTSVRQKW QQAASSAKWI GIGKRLNRQN1680
 1681 TLNPGHRLYG TSNSMTEHTS ANVVTCYHMM IGEFKFYLHP LHAAEGSVLV EVLHTPELLF1740
 1741 PEGSALRDQC ARGGVVAKLI QHCKTLMQNK QDNLCARVLQ TLCKMCDCTK QQLTHQGQQL1800
 1801 RQLLLQRYFG HHNNHHPPLD RQQSKIGEVI EAVKEKKEET WSQERDLYAI QCKLNDAGAS1860
 1861 DLVTDIIIME PSREIFLKAI HLARALLHEG NDKVQHSFYM RMKQKDIHEP FFKAILTRIQ1920
 1921 TAQNRLKSDM MSCSDSKPKV SLSATVSRRS STVLTPLIDA GDTGFNGALF EVPQQVRHPS1980
 1981 ISEMSQLSND LTHSIPDLAP YQDEEKSTDA LPPEVALVEP ILRVLQLLCE NHNSLLQNFL2040
 2041 RKQSDRTNHN LVSETLSFLD TVCGSTKGSL GVFGEIGEHN FSLITQTLAT LTEFCQGPCH2100
 2101 ENQNTMAMQE NGLNIIISLV LNEIKPLADD HMELALEIKS QASKLLLAIM ESRHDGENAN2160
 2161 RVLRNMANMS GGPKQLVHAI KQAYEMTNSN HHMLKSISRD LFRQAEDDLK KKSGPQITVN2220
 2221 TVTLPEINVD ASGIVSIHTE KNISSSLDDK FNDDDIPSVD PREVGHNIYI LAHQLAIHDG2280
 2281 ELEIWLDGSD EKKDDLTREA LNYYKERTAQ IEIVRRDRTL ERVVFPINDI CSYLTKDTKD2340
 2341 YVYNNTERDN QGSKVTEFFD EWETMYHEMI WQRKLQDRKW LSWCAFRLPL WTRLSFHFAF2400
 2401 IVNALVARYY PLPEHSNSSI SLGNLYSWFA VFSSFLLAHY LRHDKIYLHK TSLLILASLC2460
 2461 FLLLSSIGVT LTLYIFGILQ LVNKIVHVVA FVSNKGLEDR PIAEILACRN LHYLLVYLFI2520
 2521 CILGLLVHPM IYCILLFDII FTEETLQNVI ASVTRNYQSI VWTGLLALIL LYFFSILGFL2580
 2581 YFRHDFYLEV DPVENDSSAT ISSGIPSETC PSEGCPGLQP SEKDDNDDEK KVKSCETLWM2640
 2641 CILQTGYQGL RNGGGIGDVL RNPAPWEDMF IWRVAYDMTF FVVLIVIVLN LIFGVIIDTF2700
 2701 GDLRAEKNEK EQILKNNCFI CGLDRSRFDN RSVTFETHRE TEHNIWHYLY YIVMLQIKDE2760
 2761 TEFTGPESYV AQCVKDRNLD WFPRMQALSL QDSELDTDQS EVKQMKDQLL QMMTLMREII2820
 2821 SQNEESRAFM EQFQPR

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