YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|32563761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	102	0.99
Transmembrane Helix	103	123	0.90
Non-Cytoplasmic	124	137	0.82
Transmembrane Helix	138	160	0.88
Cytoplasmic	161	180	0.87
Transmembrane Helix	181	201	0.94
Non-Cytoplasmic	202	275	0.96
Transmembrane Helix	276	296	0.94
Cytoplasmic	297	304	0.93
Transmembrane Helix	305	327	0.93
Non-Cytoplasmic	328	352	0.93
Transmembrane Helix	353	375	0.86
Cytoplasmic	376	388	0.80
Transmembrane Helix	389	410	0.91
Non-Cytoplasmic	411	445	0.93
Transmembrane Helix	446	468	0.85
Cytoplasmic	469	487	0.84
Transmembrane Helix	488	508	0.94
Non-Cytoplasmic	509	519	0.82
Transmembrane Helix	520	542	0.92
Cytoplasmic	543	558	0.96
Transmembrane Helix	559	581	0.91
Non-Cytoplasmic	582	602	0.89
Transmembrane Helix	603	625	0.93
Cytoplasmic	626	671	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRWHSVRRK QHQQLQAELS SGAASMLSAP ESRRVSRSMS VKAPTASEYM PLSVADKPLT  60
   61 LTVSTSHSID PNEPIAALGG LTPTKEGRVA ALRRRSSMVR DKWATKMEFL LAVVGYAVDL 120
  121 GNIWRFPSVC YKHGGGAFLI PYFIMLMIGG LPMFYMELVL GQFHRSGCVS IWRKVCPLFR 180
  181 GIGYGICCIC TFIAIFYNAI IAQAVYFAIV SLSKIWDSEV PWASCGNPWN TPRCSDDLNV 240
  241 TISRNGTPLT TPSEEYYLYK VLEVQKSTGF DDLGGVKTSM AVCLLAVFIM VYFALWKGPQ 300
  301 SSGKIVWVTA TAPYIILSIL LIRGLLLPGA KNGLYYYVTP DFEKLKDPAV WSAAATQIFF 360
  361 SLGPGFGVLL ALSSYNDFNN NCYRDAVTIS IINCATSFFS GCVVFSTLGY MSLLTNKPIN 420
  421 EVVGEHDASL IFIVYPQALA TMDYSCFWSF IFFVMLITLG IDSTFAGIEA FITGFCDESR 480
  481 FLSKNRKWFV LVICIIYYFL SFPAISYGGQ FVIPFLDEYG VSLSVLFIVT CEMIAVCWFY 540
  541 GVDQFSKDIR AMLGFYPGIY WRVCWTCSPV FISVIFIMTV YNSSFKPIQM ASYTFPWWSV 600
  601 ILGWFLRLLS VLAIPVFAII YLLSGTGTLY ERFRWAITPQ QRRNSATSLA ADPTQIIDSS 660
  661 LLDPIHTLTP V