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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38303863
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSLTFLSV FLKITVLSVT AQQTRNCQSG PLERSGTSTY AAAGPPRFLI FLQGNSIFRI  60
   61 NTDGTNHQQL VVDAGVSVVM DFHYKEERLY WVDLERQLLQ RVFFNGSGQE TVCKVDKNVS 120
  121 GLAINWIDGE ILRTDRWKGV ITVTDMNGNN SRVLLSSLKR PANILVDPTE RLIFWSSVVT 180
  181 GNLHRADLGG MDVKTLLEAP ERISVLILDI LDKRLFWAQD SREGSHGYIH SCDYDGGSIH 240
  241 HIRHQARHDL LTMAIFGDKI LYSALKEKAI WIADKHTGKN VVRVNLDPAS VPPRELRVVH 300
  301 LHAQPGTENR AQASDSERCK QRRGQCLYSL SERDPNSDSC ACAEGYTLSR DRKYCEDVNE 360
  361 CALQNHGCTL GCENIPGSYY CTCPTGFVLL PDGKRCHELV ACPGNRSECS HDCILTSDGP 420
  421 LCICPAGSVL GKDGKTCTGC SSPDNGGCSQ ICLPLSLASW ECDCFPGYDL QLDRKSCAAS 480
  481 GPQPFLLFAN SQDIRHMHFD GTDYKTLLSR QMGMVFALDY DPVESKIYFA QTALKWIERA 540
  541 NLDGSQRERL ITEGVDTPEG LAVDWIGRRI YWTDSGKSVI EGSDLSGKHH QIIIKESISR 600
  601 PRGIAVHPKA RRLFWTDTGM SPRIESSSLQ GSDRTLIASS NLLEPSGVAI DYLTDTLYWC 660
  661 DTKLSVIEMA DLDGSKRRRL TQNDVGHPFS LAVFEDHVWF SDWAIPSVIR VNKRTGQNRV 720
  721 RLRGSMLKPS SLVVVHPLAK PGADPCLHRN GGCEHICQES LGTAQCLCRE GFVKAPDGKM 780
  781 CLTRKDDQIL AGDNADLSKE VASLDNSPKA YVPDDDRTES STLVAEIMVS GLNYKDDCGP 840
  841 GGCGSHAHCI SEGEAAVCQC LKGFAGDGNL CSDIDECELG SSDCPPTSSR CINTEGGYVC 900
  901 QCSEGYEGDG IYCLDVDECQ QGSHGCSENA TCTNTEGGYN CTCAGCPSAP GLPCPDSTSP 960
  961 SLLGKDGCHW VRNSNTGCPP SYDGYCLNGG VCMYVESVDR YVCNCVIGYI GERCQHRDLR1020
 1021 WWKLRHADYG QRHDITVVSV CVVALALLLL LGMWGTYYYR TRKQLSESSK KPSEESSSNV1080
 1081 SSNGPDSSGA GVSSGPQPWF VVLEEHQQPK NGRLPAAGTN GTVVEAGLSS SL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle