YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VAPA_RAT
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKHEQILVL DPPSDLKFKG PFTDVVTTNL KLQNPSDRKV CFKVKTTAPR RYCVRPNSGV  60
   61 IDPGSIVTVS VMLQPFDYDP NEKSKHKFMV QTIFAPPNIS DMEAVWKEAK PDELMDSKLR 120
  121 CVFEMPNEND KLNDMEPSKA VPLNASKQDG PLPKPHSVSL NDTETRKLME ECKRLQGEMM 180
  181 KLSEENRHLR DEGLRLRKVA HSDKPGSTSA VSFRDNVTSP LPSLLVVIAA IFIGFFLGKF 240
  241 IL

Type	Start	End	Confidence
Non-Cytoplasmic	1	218	0.66
Transmembrane Helix	219	241	0.86
Cytoplasmic	242	242	0.65