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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38173782
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.95
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRRRRRRRRR RRRRRHSPLG RRRRSWRCPG SLAGKQLRGR RGGPRRPKRL AGGAVGWVLL  60
   61 VRGVHSVRAG GGRPPRAADM KKDVRILLVG EPRVGKTSLI MSLVSEEFPE EVPPRAEEIT 120
  121 IPADVTPERV PTHIVDYSEA EQSDEQLHQE ISQANVICIV YAVNNKHSID KVTSRWIPLI 180
  181 NERTDKDSRL PLILVGNKSD LVEYSSMETI LPIMNQYTEI ETCVECSAKN LKNISELFYY 240
  241 AQKAVLHPTG PLYCPEEKEM KPACIKALTR IFKISDQDND GTLNDAELNF FQRICFNTPL 300
  301 APQALEDVKN VVRKHISDGV ADSGFTLKGF LFLHTLFIQR GRHETTWTVL RRFGYDDDLD 360
  361 LTPEYLFPLL KIPPDCTTEL NHHAYLFLQS TFDKHDLDRD CALSPDELKG LFKVFPYIPW 420
  421 GPDVNNTVCT NERGWITYQG FLSQWTLTTY LDVQRCLEYL GYLGYSILTE QESQASAVTV 480
  481 TRDKKIDLQK KQTQRNVFRC NVIGVKNCGK SGVLQALLGR NLMRQKKIRE DHKSYYAINT 540
  541 VYVYGQEKYL LLHDISESEF LTEAEIICDV VCLVYDVSNP KSFEYCARIF KQHFMDSRIP 600
  601 CLIVAAKSDL HEVKQEYSIS PTDFCRKHKM PPPQAFTCNT ADAPSKDIFV KLTTMAMYPH 660
  661 VTQADLKSST FWLRASFGAT VFAVLGFAMY KALLKQR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle