YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18077490, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHMLFYKSYV REFIGEFLGT FVLMFLGEGA TANFHTTGLS GDWYKLCLGW GLAVFFGILV  60
   61 SAKLSGAHLN LAVSIGLSSI NKFDLKKIPV YFFAQLLGAF VGTSTVYGLY HGFISNSKIP 120
  121 QFAWETSRNP SISLTGAFFN ELILTGILLL VILVVVDENI CGKFHILKLS SVVGLIILCI 180
  181 GITFGGNTGF ALNPSRDLGS RFLSLIAYGK DTFTKDNFYF WVPLVAPCVG SVVFCQFYDK 240
  241 VICPLVDLAN NEKDGVDL

Type	Start	End	Confidence
Cytoplasmic	1	12	0.90
Transmembrane Helix	13	32	0.89
Non-Cytoplasmic	33	47	0.75
Transmembrane Helix	48	67	0.89
Cytoplasmic	68	89	0.79
Transmembrane Helix	90	111	0.93
Non-Cytoplasmic	112	133	0.89
Transmembrane Helix	134	156	0.90
Cytoplasmic	157	165	0.84
Transmembrane Helix	166	186	0.89
Non-Cytoplasmic	187	218	0.88
Transmembrane Helix	219	238	0.59
Cytoplasmic	239	258	0.60