YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|37693198
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKIQKSSGM FWKRNSESSN LYNFLNGLFC IGGIYFFFII FGYYQEKLPQ LGRGSDRFYY  60
   61 NIFLICVLCL SNSLCSLSAI FFKSRLNNEN VMSSLKKNVD KYFIKQIMLI SITYSIAMIA 120
  121 TNYSLSHVNF PTQVLVKSGK MIPIVVGGYF FFGKKYPYYD YISVFLITSS LVLFNLLRTK 180
  181 SSKEVHQTTF GILLLCISLL CDGLTGPRQD KLLSKYNVDS VNLMFYVNIF AFIFNLLASL 240
  241 IIEGNKPYIF LQKYTTSYYY ILAFSVSGTL GQFFVFYSLR VYGSLYTSLF TTLRKALSTV 300
  301 VSVYLFGHVL KPLQWICIGV IFSTLIVQSY LKKQSKKVQS KNK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	42	0.96
Non-Cytoplasmic	43	59	0.91
Transmembrane Helix	60	82	0.95
Cytoplasmic	83	101	0.98
Transmembrane Helix	102	123	0.92
Non-Cytoplasmic	124	157	0.93
Transmembrane Helix	158	177	0.96
Cytoplasmic	178	186	0.83
Transmembrane Helix	187	206	0.93
Non-Cytoplasmic	207	222	0.89
Transmembrane Helix	223	242	0.93
Cytoplasmic	243	257	0.78
Transmembrane Helix	258	279	0.91
Non-Cytoplasmic	280	311	0.90
Transmembrane Helix	312	331	0.93
Cytoplasmic	332	343	0.96