YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23497431, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGVLKCAFN AGVKVKSAAE VGKRAVEYFR GDDFVNFLST NGEMLKKKFP NLFINRNLSD  60
   61 MKEIEEFADM FIQKGYIYKA QYKPIKGINE KDENGVYKRP KWPKRLIMTS KQNFDKTSFY 120
  121 ILVHERNKKL QYFMLISLIS IVLICCMFPV WPLRLKLALW HISVAFLTLI SIIIVGRLVA 180
  181 FIFFWFFGVD YWIFPNLFDE ECNVVESFLP LQSWVYRNDT WFLFVARMCT AVLLAIAIQQ 240
  241 LGKTHSIADI RNFATQSYID IIEWGNKKLA ASPENVSMYK SIDSKATFEG NVDDDDTVYD 300
  301 ENEENYDCLK KCGFTSFEEL VRKCFLKCEC MEVII

Type	Start	End	Confidence
Non-Cytoplasmic	1	131	0.82
Transmembrane Helix	132	153	0.93
Cytoplasmic	154	163	0.66
Transmembrane Helix	164	187	0.91
Non-Cytoplasmic	188	219	0.82
Transmembrane Helix	220	242	0.84
Cytoplasmic	243	335	0.88