YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148540082, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.21
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	67	0.98
Transmembrane Helix	68	90	0.89
Non-Cytoplasmic	91	98	0.69
Transmembrane Helix	99	123	0.65
Cytoplasmic	124	185	0.83
Transmembrane Helix	186	207	0.81
Non-Cytoplasmic	208	217	0.61
Transmembrane Helix	218	236	0.52
Cytoplasmic	237	293	0.51
Transmembrane Helix	294	313	0.65
Non-Cytoplasmic	314	318	0.45
Transmembrane Helix	319	333	0.21
Cytoplasmic	334	340	0.43
Transmembrane Helix	341	368	0.74
Non-Cytoplasmic	369	380	0.46
Transmembrane Helix	381	403	0.73
Cytoplasmic	404	413	0.58
Transmembrane Helix	414	435	0.84
Non-Cytoplasmic	436	440	0.47
Transmembrane Helix	441	458	0.62
Cytoplasmic	459	474	0.67
Transmembrane Helix	475	500	0.88
Non-Cytoplasmic	501	703	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASPEPPQK GGTLVLVRRQ PPVSQGLLET LKARLKKSCT CSMPCAQALV QGLFPVIRWL  60
   61 PQYRLKEYLA GDVMSGLVIG IILVPQAIAY SLLAGLQPIY SLYTSFFANL IYFLMGTSRH 120
  121 VNVGIFSLLC LMVGQVVDRE LQLAGFDPSQ DSLGPGNNDS TLNNTATLTV GLQDCGRDCH 180
  181 AIRIATALTL MAGLYQVLMG ILRLGFVSTY LSQPLLDGFA MGASVTILTS QAKHLLGVRI 240
  241 PRHQGLGMVI HTWLSLLQNV GQANLCDVVT SAVCLAVLLT AKELSDRYRH YLKVPVPTEL 300
  301 LVIVVATIAS HFGQLHTRFG SSVAGNIPTG FVAPQIPDPK IMWSVALDAM SLALVGSAFS 360
  361 ISLAEMFARS HGYSVSANQE LLAVGCCNVL PAFFHCFATS AALSKTLVKI ATGCQTQLSS 420
  421 VVSAAVVLLV LLVLAPLFHD LQRCVLACII VVSLRGALRK VKDLPQLWRL SPADALVWVA 480
  481 TAATCVLVSI EAGLLAGVFF SLLSLAGRTQ RPRAALLARI GDSTFYEDAA EFEGLLPPPE 540
  541 VRVFRFTGPL YYANKDFFLR SLYSLTGLDA GYSATRKDRG TEVGVSNRSL VDRKDLGSVS 600
  601 SGDGLVVPLA FGFHTVVIDC APLLFLDVAG MATLKDLRKN YRALDITLLL ACCSPSVRDT 660
  661 LRKGGFLGED QGTEEELLFP SVHSAVETAC ARREELMAAD SAL