YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55562725, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTIASPLPL ATTGPENGSS IYDYDYLDDV TVLVCSKDEV LSFGRVFLPV VYSLIFVLGL  60
   61 AGNLLLLVVL LHSVPQRRRM IELYLLNLAV SNLLFVVTMP FWAISVAWHW VFGSFLCKVV 120
  121 STLYSINFYC GIFFITCMSL DKYLEIVHAQ PLHRPKTRFR NLLLIVMVWI TALAVSVPEM 180
  181 VFVKVHQTLD GVWHCYADFG GHATIWKLYL RFQMNLLGFL FPLLAMIFFY SRIGCVLVRL 240
  241 RPPGQGRALR TAAALVVVFF LLWFPYNLTL FLHSLLDLHV FGNCEISHRL DYMLQVTESL 300
  301 AFSHCCFTPV LYAFSSHSFR QYLKAVLSVV LRRHQAPGTA HAPPCSHSES SRVTAQEDVV 360
  361 SMNDLGERQA DISLNKGEIG NN

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.98
Transmembrane Helix	50	72	0.92
Cytoplasmic	73	82	0.89
Transmembrane Helix	83	104	0.90
Non-Cytoplasmic	105	119	0.72
Transmembrane Helix	120	140	0.88
Cytoplasmic	141	160	0.87
Transmembrane Helix	161	183	0.89
Non-Cytoplasmic	184	215	0.89
Transmembrane Helix	216	236	0.86
Cytoplasmic	237	247	0.89
Transmembrane Helix	248	270	0.84
Non-Cytoplasmic	271	299	0.89
Transmembrane Helix	300	319	0.65
Cytoplasmic	320	382	0.73