YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113531728, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPGRPAPAS FRDRTNEFRA AVESAARYAS SSAAAAPSSS SGGGVGGPLD VSRGAASAHS  60
   61 EFNRRASKIG LGIHQTSQKL ARLAKLAKRT SVFDDPTVEI QELTAVIKKD ITALNSAVVD 120
  121 LQVLCNSQNE SGNLSKDTTN HSTTVVDNLK NRLMSATKEF KEVLTMRTEN LKVHENRRQM 180
  181 FSSSAANNAS NPFVRQRPLV TRDGPESSVP PAPWASDSAT TPLFQRKKTN GDHGASSSSS 240
  241 QPFMQQQLVQ QDSYMQSRAE ALQNVESTIH ELSNIFTQLA TMVSQQGELA IRIDENMDDT 300
  301 LANVEGAQGQ LLKYLNSISS NRWLMMKIFF VLMVFLMIFI FFVA

Type	Start	End	Confidence
Cytoplasmic	1	322	0.61
Transmembrane Helix	323	343	0.95
Non-Cytoplasmic	344	344	0.61