YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494422
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVHYINILL FALPLNILIY NQRNHKSTTH HTLKIPITRL LCECELYAPT NYDSDPEMKR  60
   61 VMQQFVDRTT QRFHEYDNRM KDKRQKCKDK CDKEIQKIIL KDKLEKELMD KFATLQTDIQ 120
  121 NDAIPTCVCE KSLADKVEKV CFRCGGLLGG GIAPGWGLVS GLGYVGWTNY VTQTALQKGI 180
  181 EAVISYLEQI PGIKGLPGFN LANIVNPNNY SSGGLLTTAI DAAARPICSV NHSKTPAFCS 240
  241 YATQNGGSII AKVSVDAENA ANAGIDAASA EAANLAPKTL TLTNTIIVSF VAIVVIVLVM 300
  301 LIIYFILHYR RKKKMKKKLQ YIKLLKE

Type	Start	End	Confidence
Cytoplasmic	1	139	0.67
Transmembrane Helix	140	160	0.59
Non-Cytoplasmic	161	285	0.97
Transmembrane Helix	286	308	0.95
Cytoplasmic	309	327	0.98