YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7494421
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLHFPKILL FFFPSNILLT SYHVHSKNKP YITPRHTPTI TSRVLRECDI HKSIYDNDED  60
   61 MKSVKENFDR QISQRFEEYE ERMKGKRQKR KEERDKNIQE IIEKDRMDKS LAEKVEKCCL 120
  121 ICGCGLGGVA ASVGIFGGIA ISELKKAAMI AAIASAQKTG VLAGEAARIP AGIKAVIAGL 180
  181 KRMGISTLGG KDLGSYFATT DYTNFKTIAR VINSEYQTDS CLIGGPATDK SKTICNWVRA 240
  241 NFVAPQDSPG KGGSVYKSIE TAVKSIVTDA ETVAQRAVEN ATEEVIKNST AAAESTYAGC 300
  301 QTAIIASVVA IIIIALVMII IYLVLRYRRK KKMKKKAEYT KLLNQ

Type	Start	End	Confidence
Signal Peptide	1	26	0.83
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	302	0.96
Transmembrane Helix	303	325	0.96
Cytoplasmic	326	345	0.97